Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16700.1 68417.m02523 phosphatidylserine decarboxylase simila...   215   4e-56
At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putat...    66   3e-11
At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putat...    63   2e-10
At4g32590.3 68417.m04641 ferredoxin-related contains Pfam profil...    28   8.4  
At4g32590.1 68417.m04640 ferredoxin-related contains Pfam profil...    28   8.4  

>At4g16700.1 68417.m02523 phosphatidylserine decarboxylase similar
           to SP|P27465 Phosphatidylserine decarboxylase proenzyme
           (EC 4.1.1.65 {Cricetulus griseus}; contains Pfam profile
           PF02666: phosphatidylserine decarboxylase
          Length = 453

 Score =  215 bits (524), Expect = 4e-56
 Identities = 134/328 (40%), Positives = 180/328 (54%), Gaps = 50/328 (15%)

Query: 1   MFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRP 60
           + P R  SR WG   + EIPV +R + Y  + R F  NL +AA+  L+ Y SL  FF R 
Sbjct: 121 VLPLRSISRAWGSFMSLEIPVWMRPYAYKAWARAFHSNLEEAALP-LEEYTSLQDFFVRS 179

Query: 61  LRDGARYISAAPC--VSPCDGVVLNCGPADTDK--IEQVKGVTYSLEEFLGENKWLK--- 113
           L++G R I   PC  VSP DG VL  G    ++  IEQVKG +YS+   LG N  L    
Sbjct: 180 LKEGCRPIDPDPCCLVSPVDGTVLRFGELKGNRGMIEQVKGHSYSVPALLGNNSLLPMEP 239

Query: 114 -------------RKDESYYNSLL---KNKENI-------LHQCIIYLAPGDYHRFHAPC 150
                        + D+S+    L   K +EN+       L+ C+IYL PGDYHR H+P 
Sbjct: 240 EGKNESKEEAVGDKSDKSWLRVSLASPKLRENVSASPMKGLYYCVIYLKPGDYHRIHSPA 299

Query: 151 DWTATFRRHFSGKLLSVNPWLAKLIPGLFTVNERAVYVGEWEYGFFSMTAVGATNVGSIE 210
           DW AT RRHF+G+L  VN    + I  L+  NER V  G W+ GF ++ AVGATN+GSIE
Sbjct: 300 DWNATVRRHFAGRLFPVNERATRTIRNLYVENERVVLEGIWKEGFMALAAVGATNIGSIE 359

Query: 211 IFKDPELRTN--------TKGKRNRVNELELGQVCMSKGELFGQFNMGSTIILLFEAP-- 260
           +F +PELRTN        T+    RV + E   + + KG+    FNMGST++L+F+AP  
Sbjct: 360 LFIEPELRTNKPKKKLFPTEPPEERVYDPEGLGLRLEKGKEVAVFNMGSTVVLIFQAPTA 419

Query: 261 ---------KDFKFDMAAGDKVLVGQSL 279
                     D++F +  GD+V VGQ+L
Sbjct: 420 NTPEGSSSSSDYRFCVKQGDRVRVGQAL 447


>At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 635

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 20/191 (10%)

Query: 30  TYIRMFSVNLNDAAVT-DLKYYKSLSAFFTRPLRDGARYISAAP----CVSPCDGVVLNC 84
           +++  F   +N A V   L ++K+ + FF R L+ GAR I+        VS  D  ++  
Sbjct: 389 SFLEFFKDQINMAEVKYPLDHFKTFNEFFVRELKPGARPIACMDQDDVAVSAADCRLMAF 448

Query: 85  GPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKENILHQCIIYLAPGDYH 144
              D      +KG  +S++  LG +    + D     SL+          I  LAP DYH
Sbjct: 449 QSVDDSTRFWIKGRKFSIKGLLGNDV---QSDAFLDGSLV----------IFRLAPQDYH 495

Query: 145 RFHAPCDWTATFRRHFSGKLLSVNP-WLAKLIPGLFTVNERA-VYVGEWEYGFFSMTAVG 202
           RFH+P         + SG L +VNP  +      +FT N+R  V +   E+G  +  A+G
Sbjct: 496 RFHSPVSGVIEKFVNVSGSLYTVNPIAVNSKYCNVFTENKRTIVIISTAEFGKVAFVAIG 555

Query: 203 ATNVGSIEIFK 213
           AT VGSI   +
Sbjct: 556 ATMVGSISFVR 566


>At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 615

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 24/192 (12%)

Query: 31  YIRMFSVNLNDAAVT-DLKYYKSLSAFFTRPLRDGARYISA------APCVSPCDGVVLN 83
           ++  F   +N A V   L+++K+ + FF R L+ GAR I+       A C + C  +   
Sbjct: 371 FLEFFKDQINMAEVKYPLQHFKTFNEFFIRELKPGARPIACMNRNDVAVCAADCRLMAFQ 430

Query: 84  CGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKENILHQCIIYLAPGDY 143
               D+ +   +KG  +S+   LG+N        ++ +  L          I  LAP DY
Sbjct: 431 -SVEDSTRF-WIKGKKFSIRGLLGKNV----NPNAFLDGSL---------VIFRLAPQDY 475

Query: 144 HRFHAPCDWTATFRRHFSGKLLSVNP-WLAKLIPGLFTVNERAV-YVGEWEYGFFSMTAV 201
           HRFH P           SG L +VNP  +      +FT N+R V  +   E+G  +  A+
Sbjct: 476 HRFHVPVSGVIEQFVDVSGSLYTVNPIAVNSKYCNVFTENKRTVAIISTAEFGKVAFVAI 535

Query: 202 GATNVGSIEIFK 213
           GAT VGSI   +
Sbjct: 536 GATMVGSINFVR 547


>At4g32590.3 68417.m04641 ferredoxin-related contains Pfam profile:
           PF00111 2Fe-2S iron-sulfur cluster binding domain
          Length = 180

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 79  GVVLNCG---PADTDKIEQVKGVTYSLEEFLGENKWLKRKDESY---YNSLLKNKEN 129
           G V+NCG      T  +E + G     E    EN++LK+K ES+     +++ NKEN
Sbjct: 103 GKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKEN 159


>At4g32590.1 68417.m04640 ferredoxin-related contains Pfam profile:
           PF00111 2Fe-2S iron-sulfur cluster binding domain
          Length = 173

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 79  GVVLNCG---PADTDKIEQVKGVTYSLEEFLGENKWLKRKDESY---YNSLLKNKEN 129
           G V+NCG      T  +E + G     E    EN++LK+K ES+     +++ NKEN
Sbjct: 103 GKVMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKEN 159


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,864,797
Number of Sequences: 28952
Number of extensions: 289307
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 12,070,560
effective HSP length: 80
effective length of query: 208
effective length of database: 9,754,400
effective search space: 2028915200
effective search space used: 2028915200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)