Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001763-TA|BGIBMGA001763-PA|undefined
         (379 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   4.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 358 DSDLRRHLKRILDWT 372
           D DL  H+  ILDWT
Sbjct: 209 DYDLSSHVITILDWT 223


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 179 EIASRTFDVTEFLVQQDNMQIKKEQDEAFDLKVNESNTDDFYSDNAIDFATYFAARSEKI 238
           E+  +T       V   N   KK   +  D   ++++  D   +N +   T  +    K+
Sbjct: 242 ELIRQTHKSPSHSVDNSNSSEKKSSIQHGD-DAHKTHHLDKNPENTL--GTMLSIHPSKL 298

Query: 239 EVEEPNLYHQN 249
           +VE+ NL H N
Sbjct: 299 DVEQMNLLHSN 309


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,234
Number of Sequences: 317
Number of extensions: 2940
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 379
length of database: 114,650
effective HSP length: 58
effective length of query: 321
effective length of database: 96,264
effective search space: 30900744
effective search space used: 30900744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)