Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001761-TA|BGIBMGA001761-PA|undefined
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20930.1 68418.m02486 protein kinase, putative nearly identic...    30   1.5  
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    30   2.0  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    30   2.0  
At3g28790.1 68416.m03593 expressed protein                             29   3.5  
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein...    29   4.7  
At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative simi...    28   6.2  
At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative simi...    28   6.2  
At4g24290.2 68417.m03488 expressed protein                             28   8.2  
At4g24290.1 68417.m03487 expressed protein                             28   8.2  
At3g63500.2 68416.m07153 expressed protein                             28   8.2  

>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
           to protein kinase tousled gi|433052|gb|AAA32874
          Length = 688

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 4   SKVEADHKGSSTAKSRPPRTESDTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKE 63
           +K+EA   G + + ++PP+ +       S W++  +    V  +T    S+T   D + E
Sbjct: 26  AKLEARLTGKTPSSAKPPQQQQQQQQQVSLWSS-ASAAVKVVTSTPPGLSETSISDSDDE 84

Query: 64  LSPDAI--ANLLNKTKV--SHNYSAAD 86
            + D +  AN   + KV  S+N+S  D
Sbjct: 85  NTGDFLIRANTKKRQKVQESNNFSVVD 111


>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 20  PPRTESDTHPHFSNWTTPGTDRPD--VSPATDSTNSKTGPEDLEKELSPDAIANLL 73
           PP  + D  P    W  PG D  D  +    DS  +K    D  +++ P+A A L+
Sbjct: 300 PPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAALV 355


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
           huntingtin interacting protein 1 [Homo sapiens]
           GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 26  DTHPHFSNWTTPGTDRPDVSPATDSTNSKTGPEDLEKELSPDAIANLLNKTKVSHNY--S 83
           D  PH S+      +  + +  T S +++T P+       PD+I N+ +K  + H +  +
Sbjct: 666 DDDPHLSSIRM--VEECERATGTQSLDAETSPDSEVINSVPDSIVNIEHKEGLHHGFFST 723

Query: 84  AADIYKNNKI 93
             D+ K N++
Sbjct: 724 PEDVVKKNRV 733


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 2   SSSKVEADHKGSSTAKSRPPRTESDTHPHFSNWT----TPGTDRPDVSPATDSTNSKTGP 57
           SSS        + T  +  P T + + P  S  T    TP T  P  +PA   T+ K   
Sbjct: 269 SSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSE 327

Query: 58  ------EDLEKELSPDAIANLLNKTKVSHNYSAADIYKNNKIQSS 96
                 E   K  S  A +  ++KTK ++  S+ D YK+    SS
Sbjct: 328 SASMKKESNSKSESESAASGSVSKTKETNKGSSGDTYKDTTGTSS 372


>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 479

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12  GSSTAKSRPPRTESDTHPHFSNWTTP-GTDRPDVS 45
           GS  A+SR   ++S   P +S W  P    +P+VS
Sbjct: 263 GSDRARSRSTHSKSPGRPRYSGWDKPYDRQKPEVS 297


>At3g25830.1 68416.m03218 myrcene/ocimene synthase, putative similar
           to myrcene/ocimene synthase [Arabidopsis thaliana]
           GI:9957293; contains Pfam profiles PF03936: Terpene
           synthase family, metal binding domain, PF01397: Terpene
           synthase, N-terminal domain
          Length = 600

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 86  DIYKNNKIQSSFITWEWTFDIRNFGDFNSFMRVCFYLATTYKNAVQ-DIRKY 136
           DIY   +    F +    +D+   G+   +MR+CF +     N +  DI KY
Sbjct: 346 DIYGTLEELELFTSMVENWDVNRLGELPEYMRLCFLILYNEINGIGCDILKY 397


>At3g25820.1 68416.m03215 myrcene/ocimene synthase, putative similar
           to GI:9957293; contains Pfam profile: PF01397 terpene
           synthase family
          Length = 600

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 86  DIYKNNKIQSSFITWEWTFDIRNFGDFNSFMRVCFYLATTYKNAVQ-DIRKY 136
           DIY   +    F +    +D+   G+   +MR+CF +     N +  DI KY
Sbjct: 346 DIYGTLEELELFTSMVENWDVNRLGELPEYMRLCFLILYNEINGIGCDILKY 397


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 43  DVSPATDSTNSKTGPEDLEKELSPDAIANLLNKTKVSHNYSAADIYKNNKIQS 95
           DV  A    +SK  PEDL+K L   A    + +  V HN  +  +  ++K+++
Sbjct: 187 DVIYAKQQHSSKLQPEDLQKRLKEVADKRFV-EASVVHNTGSERVQASSKVET 238


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 43  DVSPATDSTNSKTGPEDLEKELSPDAIANLLNKTKVSHNYSAADIYKNNKIQS 95
           DV  A    +SK  PEDL+K L   A    + +  V HN  +  +  ++K+++
Sbjct: 187 DVIYAKQQHSSKLQPEDLQKRLKEVADKRFV-EASVVHNTGSERVQASSKVET 238


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 43  DVSPATDSTNSKTGPEDLEKELSPDAIANLLNKTKVSHNY--SAADIYKNNKIQSSF 97
           +V   + +T+S+    +LE E  P+  + L ++TK        +AD +KN +I  SF
Sbjct: 192 EVQGKSSTTSSEMEEGELEPEPQPETASGLAHQTKHDCKLPSCSADDHKNARIDRSF 248


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,258,451
Number of Sequences: 28952
Number of extensions: 251090
Number of successful extensions: 701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 12
length of query: 284
length of database: 12,070,560
effective HSP length: 80
effective length of query: 204
effective length of database: 9,754,400
effective search space: 1989897600
effective search space used: 1989897600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)