Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001760-TA|BGIBMGA001760-PA|undefined
         (112 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    27   2.9  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    26   6.6  

>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 6   RIYSNVTLHMAVNFTIYDSLNA-YHVLQSDYNEI 38
           R+Y N+  H+A   ++ D+LN+ Y VL   Y  +
Sbjct: 264 RVYDNIGPHLAGRSSLDDNLNSIYRVLSLSYENL 297


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 7   IYSNVTLHMAVNFTIYDSLNAYHVLQSDYNEIKVEQN 43
           +YS V     V+FT+   L + +++  D + ++ EQN
Sbjct: 511 LYSEVQRAWKVSFTLQSDLKSENIMLVDKHRLEKEQN 547


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,903
Number of Sequences: 28952
Number of extensions: 43394
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 12,070,560
effective HSP length: 72
effective length of query: 40
effective length of database: 9,986,016
effective search space: 399440640
effective search space used: 399440640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)