Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001757-TA|BGIBMGA001757-PA|undefined
         (303 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.6  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.5  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 163 SRAKKTSKYTETERREAKRPPE--IASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASF 220
           S A  TS +T+       RPP   ++ G     D+++ G+     +    +PAS +    
Sbjct: 56  SNADSTS-HTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQ----APASQQSLDA 110

Query: 221 SPPTEVAKWAP 231
           S P  + KW P
Sbjct: 111 SDPDAMGKWCP 121


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 163 SRAKKTSKYTETERREAKRPPE--IASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASF 220
           S A  TS +T+       RPP   ++ G     D+++ G+     +    +PAS +    
Sbjct: 212 SNADSTS-HTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQ----APASQQSLDA 266

Query: 221 SPPTEVAKWAP 231
           S P  + KW P
Sbjct: 267 SDPDAMGKWCP 277


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)

Query: 231 PTCLNRETKPYYEAWVNTKLAAVSRGC 257
           P C N ET    E  V+TK + +S+GC
Sbjct: 14  PECENPET----ELLVSTKRSTISQGC 36


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 229 WAPTCLNRET------KPYYEAWVNTKLAAVSRGCDLNDR 262
           W+P C    +      +P Y+A++  +  A++RG D N R
Sbjct: 236 WSPNCDKLSSTEQLFIRPMYDAFLIDQSLALNRGRDENPR 275


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 158 QIDLTSRAKKTSKYTETERREAKRPPEIASGVDKKP 193
           Q D+T+     +   +T    A+   ++ +G+D KP
Sbjct: 417 QSDITNNVNSPASMNQTPPPTAQMGLDMVTGLDVKP 452


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,941
Number of Sequences: 317
Number of extensions: 2604
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 114,650
effective HSP length: 57
effective length of query: 246
effective length of database: 96,581
effective search space: 23758926
effective search space used: 23758926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)