Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001756-TA|BGIBMGA001756-PA|undefined
(202 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 35 0.033
At3g12190.1 68416.m01520 hypothetical protein 34 0.076
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 29 2.9
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 29 2.9
At5g53620.2 68418.m06662 expressed protein 28 3.8
At5g53620.1 68418.m06661 expressed protein 28 3.8
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 3.8
At2g31840.1 68415.m03888 expressed protein 28 5.0
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 28 5.0
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim... 27 6.6
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 6.6
At1g52080.1 68414.m05875 actin binding protein family contains P... 27 6.6
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 27 8.8
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 27 8.8
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 27 8.8
At2g42440.1 68415.m05251 LOB domain protein 17 / lateral organ b... 27 8.8
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 35.1 bits (77), Expect = 0.033
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 85 IKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMI 144
++LLE+ +++ + + +I + + E+ +Q + + E SL+ ++
Sbjct: 807 VELLEQDSLRRELEDVVLAHMIGERELQNEREICALQQKDQDLCEVKHELEGSLKSVSLL 866
Query: 145 LQEKQYEHNLLRAEWDK 161
LQ+KQ E N+LR W+K
Sbjct: 867 LQQKQNEVNMLRKTWEK 883
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 33.9 bits (74), Expect = 0.076
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 120 RKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEM 179
+K+N++ N + E L+H L+EKQ E +L+ +K LGE RD+K + D
Sbjct: 213 KKKNLVLCKRN-EEAERKLKHLNRALEEKQKEVDLI----EKRLGEWRDVKGRGNGDTSG 267
Query: 180 D 180
D
Sbjct: 268 D 268
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 117 MLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRD 168
+L R++ +M NY E+ LR Q+ + + + L +E KS GEL+D
Sbjct: 475 LLDREKEVMTWKDNYSSLESDLRSSNDARQKLEDQLDNLSSELMKSNGELQD 526
>At2g17440.1 68415.m02012 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeats
Length = 526
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/121 (19%), Positives = 47/121 (38%)
Query: 60 VSLTPQITEQVKTEEIIKEYGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLT 119
VSL E EEI ++++ L + A AV KL T + +
Sbjct: 322 VSLKKLDVETNNIEEIPHSISGCSSMEELRADYNRLKALPEAVGKLSTLEILTVRYNNIR 381
Query: 120 RKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEM 179
+ M ++ N ++ + S E + + Y L++ + LR + + + E++
Sbjct: 382 QLPTTMSSMANLKELDVSFNELESVPESLCYAKTLVKLNIGNNFANLRSLPGLIGNLEKL 441
Query: 180 D 180
+
Sbjct: 442 E 442
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 113 LDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGEL-RDMKA 171
L A+M+ R + IME +NY + T + +QE+ +E+ E ++ L E R++ A
Sbjct: 94 LRAQMIARHE-IMEIQSNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHA 152
Query: 172 AVSDDE 177
D+E
Sbjct: 153 IKLDNE 158
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 113 LDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGEL-RDMKA 171
L A+M+ R + IME +NY + T + +QE+ +E+ E ++ L E R++ A
Sbjct: 94 LRAQMIARHE-IMEIQSNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHA 152
Query: 172 AVSDDE 177
D+E
Sbjct: 153 IKLDNE 158
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 109 PDRALDAEMLTRKQNIMEALTNYRD--KETSLRHFEMILQEKQYEHNLLRAEWDKSL 163
PD +D E +++ I AL YR+ +E +++ E I E++ E N R E D L
Sbjct: 787 PDNGMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEI--ERKVEINRKRLEVDYGL 841
>At2g31840.1 68415.m03888 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 133 DKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMD 180
D+E ++ +E + + R EW K++ E+ D + +DEE+D
Sbjct: 87 DEEDEVKEETFGGKEASLDDPVERREWRKTIREVIDKHPDIEEDEEID 134
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 124 IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGEL---RDMKAAVSDDEEMD 180
++E N +K TSLR F+M+ + Y N++ + + K+ GEL R + A+ + + +
Sbjct: 99 MIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKA-GELSVARRLFNAMPEKDVVT 157
Query: 181 TNSAYYVLVL 190
NS + +L
Sbjct: 158 LNSLLHGYIL 167
>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 402
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 113 LDAEMLTRKQNIMEALTNYR----DKETSLRHFEMILQEKQYEHNLLRAEWDKS 162
LD MLTR + EA YR + E + R FE I+ K+ E ++R + K+
Sbjct: 313 LDKLMLTRSDKVGEAEIEYREIKAESEEATRRFERIV--KRMEDEIVRFQEQKT 364
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 99 THAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAE 158
T A+ +L L+A + N KE ++ E + K E +AE
Sbjct: 9 TKALSELAMDSSTTLNAAESSAGDGAGPRSKNALKKEQKMKQKEEEKRRKDEE----KAE 64
Query: 159 WDKSLGELRDMKAAVSDDEEMDTNSAY 185
K + KA +DDEEMD Y
Sbjct: 65 KAKQAPKASSQKAVAADDEEMDATQYY 91
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 27.5 bits (58), Expect = 6.6
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 85 IKLLEKVTVKCVAQTHAVKKLITTPDRALD-AEMLTRKQNIMEALTNYRDKETSLRHFEM 143
IK L+ K A+ K++ D A ++L +K NI + + SL+
Sbjct: 196 IKKLQAENEKLKAECFEHSKVLLELDMAKSQVQVLKKKLNINTQ--QHVAQILSLKQRVA 253
Query: 144 ILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTNS 183
LQE++ + L E DK + LRD+++ + +E DTN+
Sbjct: 254 RLQEEEIKAVLPDLEADKMMQRLRDLESEI--NELTDTNT 291
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 27.1 bits (57), Expect = 8.8
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 86 KLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMIL 145
KLLE+++VK + H +LI PD DA + + ++ L N + E L +
Sbjct: 184 KLLEELSVKRLRGIHEAAELIHLPD---DASSSSLRSICLKELVNGQVFEPLLATTRTL- 239
Query: 146 QEKQYEHNLLRAEWDKSLGELRDMKAAVSD 175
K + +WDK L + + K+++S+
Sbjct: 240 --KTLKIIRCLGDWDKVLQMIANGKSSLSE 267
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 8.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 112 ALDAEM-LTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMK 170
A+DAE R+++ M + + +E+ ++ +Q Q + A DK L L+DM
Sbjct: 19 AVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMV 78
Query: 171 AAV-SDDEEMDTNSAYYVLVLLDL 193
A V SDD + S LL +
Sbjct: 79 AGVWSDDPALQLESTTQFRKLLSI 102
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 8.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 112 ALDAEM-LTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMK 170
A+DAE R+++ M + + +E+ ++ +Q Q + A DK L L+DM
Sbjct: 19 AVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMV 78
Query: 171 AAV-SDDEEMDTNSAYYVLVLLDL 193
A V SDD + S LL +
Sbjct: 79 AGVWSDDPALQLESTTQFRKLLSI 102
>At2g42440.1 68415.m05251 LOB domain protein 17 / lateral organ
boundaries domain protein 17 (LBD17) nearly identical to
SP|Q9SLB6 LOB domain protein 17 {Arabidopsis thaliana};
identical to ASYMMETRIC LEAVES2-like protein 15
[Arabidopsis thaliana] GI:19919001
Length = 187
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 79 YGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSL 138
YG V+ I L++ V Q +K+ T A+D+ + + Y + L
Sbjct: 24 YGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIENPNYYQDTKPQYLQESHDL 83
Query: 139 RHFEMILQEKQYEHN 153
H + Q E N
Sbjct: 84 HHHHLTTSNCQTEQN 98
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.129 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,811,105
Number of Sequences: 28952
Number of extensions: 126258
Number of successful extensions: 449
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 16
length of query: 202
length of database: 12,070,560
effective HSP length: 78
effective length of query: 124
effective length of database: 9,812,304
effective search space: 1216725696
effective search space used: 1216725696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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