Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001755-TA|BGIBMGA001755-PA|IPR007123|Gelsolin region,
IPR007122|Gelsolin
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 119 4e-27
SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 2e-21
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 87 3e-17
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 54 1e-07
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 50 4e-06
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 42 8e-04
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 38 0.012
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) 35 0.11
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_11326| Best HMM Match : Ank (HMM E-Value=2.3e-10) 33 0.27
SB_7858| Best HMM Match : Gelsolin (HMM E-Value=0.35) 32 0.61
SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17) 31 1.9
SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032) 30 2.5
SB_19295| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.3
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 29 7.5
SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37) 28 10.0
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 28 10.0
SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4) 28 10.0
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 119 bits (286), Expect = 4e-27
Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 71 NNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPL 130
+ L +D+H+WIG++STQDE G AA TV LD +QHRE G ES LF SYF++ L
Sbjct: 517 DELKYDVHFWIGKDSTQDEYGTAAYKTVELDIHLNDKPIQHREVQGFESKLFKSYFKS-L 575
Query: 131 NYLEGGNPSGFNHVVTNAGAQKRMFQVKGK--RDVRVRQVDPQIASMNKGDVFVLDLDND 188
L+GG SGF HV + R+ +V+G + V +V +S+ DVF+LD +
Sbjct: 576 TILKGGVDSGFRHVKPQE-YKPRLLRVRGTTVSNCVVEEVLLARSSLCSEDVFILDKGLN 634
Query: 189 IYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGVKD 248
+Y++VG K EK + + +++ + +G+ + ++ D+ S D F+ L + KD
Sbjct: 635 LYLWVGVKCDKDEKFRGMQEILKIK-SERNGKPKSEVNDESSMKPD-DDFYKLLPNVSKD 692
Query: 249 LVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSK-PFKQENLSPQEKS 302
GD FE L +SDA+GKI+ T + K +++ Q++S
Sbjct: 693 CEDSSFPKGDYDSFEPE------LYRISDASGKIQKTQIKKGRISRKDFDEQDES 741
Score = 58.0 bits (134), Expect = 1e-08
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 71 NNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQH----RETMGHESALFLSYF 126
+ L +D+H+WIG++STQDE G AA TV LD V+ R+++ + L
Sbjct: 906 DELKYDVHFWIGKDSTQDEYGTAAYKTVELDIYPKSVKVEEVPFVRKSLNSDDVFILDKG 965
Query: 127 QTPLNYLEGGNPSGFNHV---VTNAGAQKRMFQVKGKRDVRVRQVDPQIASMNKGDVFVL 183
+T + G+ F V V++A Q ++ ++K K R+ + D ++ DVF+
Sbjct: 966 KT---IYQKGDYDDFEPVLLRVSDASGQMKLTEMK-KGKGRITRND-----FDEKDVFLF 1016
Query: 184 DLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHH 218
D N ++V+ G KA E+ A+ + +H
Sbjct: 1017 DTGNVLFVYSGNKASIDERRLALQIGTNYLNGTNH 1051
>SB_54820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 100 bits (240), Expect = 2e-21
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 29/201 (14%)
Query: 168 VDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVD 227
V+ S+NKGDVF+LD +IY + G + VE++K I A ++RD++ GR +V I+D
Sbjct: 48 VELHYKSLNKGDVFILDDGLNIYCWNGSQCSRVERMKGIDVAKRIRDEERGGRAQVHIID 107
Query: 228 KYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPL 287
+ KFF ALGS ++ D T R A LS +SDA+G++++ +
Sbjct: 108 ECKDKGLESKFFDALGSR-GEIAEDLGT----TRSLRKPARAPSLSTMSDASGELEMREI 162
Query: 288 -SKPFKQENL-----------------------SPQEKSQAMTKAQELLNAKNYPSWVQV 323
+KP K+ NL + EKS AM + + K YP+W QV
Sbjct: 163 EAKPLKKSNLDTNDCFILDCGSSGVFVWVGKGCTKNEKSAAMKNGIDFIEKKGYPNWTQV 222
Query: 324 TRVLQNTEPAAFKQYFFTWRD 344
TRV++ E FKQ+F W D
Sbjct: 223 TRVVEGGETPIFKQFFSGWTD 243
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 86.6 bits (205), Expect = 3e-17
Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 60 IWRIQTTSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHES 119
+W + D L +D+H+WIGR STQDE G AA TV LD VQHRE M HES
Sbjct: 553 LWTYEEKEDTEK-LCYDLHFWIGRGSTQDEYGTAAYKTVELDTYLNDVPVQHREIMNHES 611
Query: 120 ALFLSYFQTPLNYLEGGNPSGFNHVVTNAGAQKRMFQVKGKRD 162
+F +YF++ + YL+GG +GFN V + R+ +V G ++
Sbjct: 612 DMFKTYFKS-ITYLKGGAETGFNQVKPKE-YKPRILKVSGDKN 652
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 54.4 bits (125), Expect = 1e-07
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 34/206 (16%)
Query: 53 GRTAGVQIWRIQTTSDNRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHR 112
GR Q ++T D + L W I+YWIG+E++ R
Sbjct: 250 GRRHHSQSDGLKTELDETDQLFWQIYYWIGKEAS-------------------------R 284
Query: 113 ETMGHESALFLSYFQTPLNYLEGGNPSGFNHVVTNAGAQKRMFQVKGKRDVRVRQVDPQI 172
E G ES F F + Y+EGG SGF + V + R+F++ + V + V P +
Sbjct: 285 EEQGDESEEFHELFDNDIAYIEGGTASGF-YSVEDQIYITRLFRLLKDKRVLLEPVLPDV 343
Query: 173 ASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYSSD 232
+S++ F+LD IY++ G AK E + N G + + ++YS D
Sbjct: 344 SSLDPTFTFILDAGLKIYIWSG--AKGDEPGEFWRLLN-----GRPAEGTITVKEEYSVD 396
Query: 233 VDVQKFF-TALGSGVKDLVPDESTGG 257
+ ALG G +L E GG
Sbjct: 397 PKRPNIYKVALGLGYLELPQVELPGG 422
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 49.6 bits (113), Expect = 4e-06
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 159 GKRDVRVRQVDPQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQV---RDQ 215
G+R+++ R ++P S N GD +VL ++++ +VG+ A +E+ K A+++ R+
Sbjct: 1457 GRRNIQTRLIEPCQKSFNSGDCYVLVTKDELFAWVGKHANAIERAKVTEIASRIFTKREL 1516
Query: 216 DHHGRGRVDIVDKYSSDVD----VQKFFTALGSGVKDLVPDESTGGDDQEFER 264
D R V V++ S D D +KF+ L + + + S+ D+++E+
Sbjct: 1517 DCKARDIV-FVEEKSQDEDNLRGAKKFWKLLNGDPEAEIKEASSLPTDEDYEK 1568
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 170 PQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKY 229
PQI+ ++ +V V D +++YV+ G+++ + ++ + Q+ + G G D + Y
Sbjct: 1598 PQISLLDTKEVLVFDFGSELYVWNGQQSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPY 1657
Query: 230 SSDVDV 235
+V
Sbjct: 1658 GKGREV 1663
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 YWIGRESTQDESGAAAILTVGLDDKFG 105
+W G + T +E GAAA++ V LD++ G
Sbjct: 1838 FWQGNDCTVNEKGAAAVMAVELDEERG 1864
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 41.9 bits (94), Expect = 8e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 76 DIHYWIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQT 128
++H+W+G E + +E AA V L K G VQ+RE G+E+ F FQ+
Sbjct: 22 NLHFWVGSECSAEEYCTAAYKAVELFVKLEGKPVQYREAEGYETEEFRKCFQS 74
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 37.9 bits (84), Expect = 0.012
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 77 IHYWIGRESTQDESGAAAILTVGLD-DKFGGAAVQ 110
I++W G +S E GAAA LTV LD + FGG AVQ
Sbjct: 204 IYFWKGNDSRVFEKGAAAKLTVDLDNNNFGGDAVQ 238
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 226 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIK-- 283
+ K SSD DV L +G + ++ + D+E E + L VSDA G+I+
Sbjct: 38 IKKMSSDEDVMAIRRLLKAGRNLGLGEKPSLISDEEAEEKYRGDTKLYRVSDAAGEIQEI 97
Query: 284 -VTPLSKPFKQENLSPQE 300
PL++ EN+S E
Sbjct: 98 GERPLTQKLLDENVSNNE 115
Score = 29.9 bits (64), Expect = 3.3
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 80 WIGRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNPS 139
W G+ ST DE AA ++ + G E G E+ F L G P
Sbjct: 264 WKGKGSTGDEVEAAKEAAKIINPQGGDNYDLFEE--GREATKFWEI-------LGGKKPY 314
Query: 140 GFNHVVTNAGA-QKRMFQVKGKR-DVRVRQ-VDPQIASMNKGDVFVLDLDNDIYVFVGEK 196
N ++ ++ A + R+F KR + V + V+ + DV +DL + IY++VGE+
Sbjct: 315 ANNILLQSSEAPEPRLFHCYNKRGSLEVEEIVNFGQDDLVDDDVMFVDLGDHIYMWVGEE 374
Query: 197 AKNVE 201
AK E
Sbjct: 375 AKKSE 379
>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
Length = 693
Score = 34.7 bits (76), Expect = 0.11
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 170 PQIASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKY 229
PQI+ ++ +V V D +++YV+ G+++ + ++ + Q+ + G G D + Y
Sbjct: 43 PQISLLDTKEVLVFDFGSELYVWNGQQSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPY 102
Query: 230 SSDVDV 235
+V
Sbjct: 103 GKGREV 108
Score = 31.5 bits (68), Expect = 1.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 79 YWIGRESTQDESGAAAILTVGLDDKFG 105
+W G + T +E GAAA++ V LD++ G
Sbjct: 283 FWQGNDCTVNEKGAAAVMAVELDEERG 309
>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 34.3 bits (75), Expect = 0.15
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 79 YWIGRESTQDESGAAAILTVGLDDKFG-GAAVQHRETMGHESALFLSY 125
+W G +ST +E GAAA++TV +D + G +H T+ + F Y
Sbjct: 197 FWQGHDSTVNEKGAAALMTVEIDSEKGPQITFKHTVTVRFDIDTFFIY 244
>SB_49838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 33.5 bits (73), Expect = 0.27
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 79 YWIGRESTQDESGAAAILTVGLDDKFG 105
+W G +ST +E GAAA++TV +D + G
Sbjct: 37 FWQGHDSTVNEKGAAALMTVEIDSEKG 63
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 33.5 bits (73), Expect = 0.27
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 217 HHGRGRV---DIVDKYSSDVDVQKFFTALGSG-VKDLVPDESTGGDDQEFERNEASNV-- 270
HHG V D + + ++V+K + G V + +P ES G D EF RNE + V
Sbjct: 791 HHGDRIVIGGDHFFRLNHPIEVKKRREKIRHGEVPEGLPPESAGAKDFEFARNELAQVQN 850
Query: 271 --ILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQAMTKAQELLNAK 315
+ +E+ +A + ++ + KQ L + + + K +E K
Sbjct: 851 ARMQAELEEAREEARIQAQEEIMKQIQLEKEAAQERLLKQKEQYEQK 897
>SB_11326| Best HMM Match : Ank (HMM E-Value=2.3e-10)
Length = 248
Score = 33.5 bits (73), Expect = 0.27
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 212 VRDQDHHGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVI 271
+ +D G + + Y D+D + F GSG +DL ++ T + + + + V+
Sbjct: 64 IHGRDSEGAYSIVLAGGYEDDLDSGEEFIYTGSGGRDLSGNKRTAEQSCDQKLTKMNRVV 123
Query: 272 LSEVSDATGKIKVT-PLSKPFKQENLSPQEKSQAMTKAQELLNAKNYPSWVQVTRVLQN 329
+ VT LSK +Q +P + + + LL+A V+ + L N
Sbjct: 124 SELDAKGANLFHVTNSLSKKHQQRAKNPVKDCKRLMCGYSLLHAAAQGGHVETVKFLLN 182
>SB_7858| Best HMM Match : Gelsolin (HMM E-Value=0.35)
Length = 103
Score = 32.3 bits (70), Expect = 0.61
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 175 MNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQVRDQDHHG 219
M DVF++DL IY +VG A EK KA + ++D+ G
Sbjct: 1 MCNSDVFIVDLGLVIYQWVGCDASPFEKNKAAQYIQVIKDERSGG 45
>SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 110 QHRETMGHESALFLSYFQTPLNYLEGGNPSGFN---HVVTNAGAQKRMFQVKGKRDVRVR 166
Q R E FL F+ L LEGG +GF T KRMF VKG D+ +
Sbjct: 38 QVRVVQYKEPEHFLRIFRGRLIILEGGKGAGFRAGCEEDTYDHEGKRMFHVKGTTDLNAK 97
Query: 167 QVDPQI 172
+ ++
Sbjct: 98 AIQKRL 103
>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
Length = 488
Score = 30.7 bits (66), Expect = 1.9
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 151 QKRMFQVKGKRDVRVRQVDPQIASMNKGDVFVLDLD--NDIYVFVGEKA-KNVEKLKAI 206
+KR + VKG DVR R P S+ D V+DL+ ND+ ++ A + V++L ++
Sbjct: 88 RKRRYHVKGSNDVRKRSGSPS-GSITTDDESVVDLNDINDLQLYDEPNAVQGVDRLSSM 145
>SB_7860| Best HMM Match : Gelsolin (HMM E-Value=0.0032)
Length = 675
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 173 ASMNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQ 211
+ +N DVF++D + YV+ G+ + E+ +A+ FA++
Sbjct: 594 SQLNTNDVFIMDSGDHCYVWSGKGSSVDERRRAMEFAHR 632
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 36 DKNAR-DKAKVHPAFANVGRTAGVQIWRI 63
+KN + + A+ PA+ G+ GVQ+WRI
Sbjct: 347 EKNVKKESAEGEPAWEGAGKEVGVQVWRI 375
>SB_19295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 175 MNKGDVFVLDLDNDIYVFVGEKAKNVEKLKAISFANQ 211
+ + DV++ D YV+VG+ A E+ A+++A+Q
Sbjct: 50 LKEDDVYIFDSGRHCYVYVGKAASIDERRNAMTYAHQ 86
>SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 974
Score = 29.9 bits (64), Expect = 3.3
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 246 VKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQAM 305
V DLVP + D + N +I VS + K PL K K+ +L+ QA
Sbjct: 494 VPDLVPCLVSSDDGDDDAMNLRHEIIRRRVSGQIVRFKRKPLEKKAKKWSLA----RQAF 549
Query: 306 TKAQELLNAKNYP 318
K + L K YP
Sbjct: 550 VKRRPLAPIKEYP 562
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 28.7 bits (61), Expect = 7.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 248 DLVPDESTGGDDQEFERNEASNVILSEVSD 277
++VP E G DDQ F R++ N++ +++
Sbjct: 94 EVVPGEELGSDDQVFPRHDNENLVSKTITN 123
>SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 258 DDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQAMTKAQELLNAKNY 317
D Q+ +N+ +I+ E+SD G+ + L+ + LSP S A L A N
Sbjct: 156 DLQQLVKNKNVAIIVDELSDEEGRYVLDVLAVLLDFDELSPSGNSVAYLLDTHFLEATNN 215
Query: 318 PSWVQ 322
+ VQ
Sbjct: 216 GTVVQ 220
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 28.3 bits (60), Expect = 10.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 281 KIKVTPLSKPFKQENLSPQEKSQAMTKAQEL--LNAKNYPSWVQVTRVLQNTEPAAFK 336
KI+ P ++ F++ L + A++ L +N K+ + V +V + TEP A+K
Sbjct: 183 KIQNNPFARAFREPKLKKRAFMDAISVDTSLNDVNVKSGTPRLDVPKVTEETEPLAYK 240
>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
Length = 912
Score = 28.3 bits (60), Expect = 10.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 266 EASNVILSEVSDATGKIKVTPLSKPFKQENLSPQEKSQAMTKAQELLNAKNYPSWVQVTR 325
E N +LS I+ L +E Q K QA + +ELL+ S +Q+T+
Sbjct: 687 EMVNSLLSTAQQLKCMIEQAKLQSEAAREAAVAQAKLQAEAEKKELLSQTRMNSLIQLTK 746
Query: 326 VLQNTE 331
L + +
Sbjct: 747 ALNDAQ 752
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 28.3 bits (60), Expect = 10.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 209 ANQVRDQDHHGRGRVDIVDKYSSDVDVQKF 238
A QV+D ++DIV Y D D+QKF
Sbjct: 413 ARQVKDSTQRAEQKMDIVITYLLDRDLQKF 442
>SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)
Length = 671
Score = 28.3 bits (60), Expect = 10.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 193 VGEKAKNVEKLKAISFANQVRDQDHHGRGRVDIVDKYS 230
V E +++++ L ++S +NQ D G VDI+DK S
Sbjct: 474 VAELSQSIKTLDSVSVSNQSMDPVDSLSGSVDILDKES 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,521
Number of Sequences: 59808
Number of extensions: 478584
Number of successful extensions: 1122
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 42
length of query: 353
length of database: 16,821,457
effective HSP length: 83
effective length of query: 270
effective length of database: 11,857,393
effective search space: 3201496110
effective search space used: 3201496110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -