Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001746-TA|BGIBMGA001746-PA|IPR013032|EGF-like region,
IPR006149|Nematode-specific EB region, IPR009030|Growth factor,
receptor
         (565 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    35   0.002
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   1.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 75/323 (23%), Positives = 103/323 (31%), Gaps = 40/323 (12%)

Query: 202 CDLNNPCPSPYQCSKFSS---CVCPVGYYGNEAGTLCLAELGSPSTSEQCVGLLAEVRDG 258
           CD ++PC +   C   ++   C CP GY G + G     +  S +  E     +      
Sbjct: 65  CD-SSPCLNGATCQDHTTHYTCHCPYGYTGKDCGEY--VDWCSTNPCENQATCVQNKNQY 121

Query: 259 VCTCPANF---FFDENMRDCVKVT-RRITD--SCVSDMNCFTFGSAARCGPPQQPWQLRS 312
            C C   +     D  M  C     R++       ++  C   G++ RC           
Sbjct: 122 QCLCGVGWTGKVCDVEMVSCKDAALRKVVPLKKLCNNGTCEDIGNSHRCHCSDG---YSG 178

Query: 313 CECIPELAVWDADRNICRFFAGIGETCEVDSDCLAGELEIQCVKDEAGQGYCTCPEDLIA 372
             C  E+   + D   C+     G TC +D   L G    +C K   GQ  C    D   
Sbjct: 179 SYCQTEIN--ECDSAPCQN----GGTC-LD---LIGSYSCKCPKGFQGQN-CELNVDDCK 227

Query: 373 VDGLCVTSGLVLGEACQVSLEC-SGTENAVCTDGVCSCNTGYQQVDDFCAPVIGG-TCSV 430
            +  C   G         S  C SGT   +C   V  C  G    +  C   +GG  C  
Sbjct: 228 PNP-CQNGGTCHDLVNSFSCSCPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFECKC 286

Query: 431 DSDCVIPN-----TACFE--IDNSMTCQCKERFVAYDDECWPNVDGFQSACNVTAQCTQA 483
               V P        C      N+ T  C +    Y   C     G      V    T  
Sbjct: 287 PPGFVGPRCEGDINECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFCATSP 346

Query: 484 LGNEGVC----LDGACACVEGFH 502
             N GVC        C C EGF+
Sbjct: 347 CQNGGVCTTIHAGHKCTCPEGFY 369



 Score = 27.5 bits (58), Expect = 0.26
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 201 FCDLNNPCPSPYQCSKFSS---CVCPVGYYGNEAGTLCLAELGSPSTSEQCV-GLLAEVR 256
           FC   +PC +   C+   +   C CP G+YG      C    G    S  C  G +  + 
Sbjct: 341 FC-ATSPCQNGGVCTTIHAGHKCTCPEGFYGKN----CEFS-GYDCDSNPCQNGGVCRIS 394

Query: 257 DG---VCTCPA 264
           DG   +C CP+
Sbjct: 395 DGGGYICDCPS 405



 Score = 24.6 bits (51), Expect = 1.9
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 15/80 (18%)

Query: 198 EGQFCDLN------NPCPSPYQCSKF---SSCVCPVGYYGNEAGTLCLAELGS--PSTSE 246
           +GQ C+LN      NPC +   C       SC CP G      G +C   +    P    
Sbjct: 215 QGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSG----TLGYICEINVDDCRPGACH 270

Query: 247 QCVGLLAEVRDGVCTCPANF 266
                L +V    C CP  F
Sbjct: 271 NNGTCLDKVGGFECKCPPGF 290



 Score = 24.2 bits (50), Expect = 2.4
 Identities = 62/288 (21%), Positives = 96/288 (33%), Gaps = 46/288 (15%)

Query: 202 CDLNNPCPSPYQCSKFS---SCVCPVGYYGNEAGTLCLAELGSPSTSEQCVGLLAEVRDG 258
           CD + PC +   C       SC CP G+ G     L + +   P+  +        V   
Sbjct: 188 CD-SAPCQNGGTCLDLIGSYSCKCPKGFQGQNC-ELNVDDC-KPNPCQNGGTCHDLVNSF 244

Query: 259 VCTCPAN---FFFDENMRDCVKVTRRITDSCVSDMNCFTFGSAARCGPPQQPWQLRSCEC 315
            C+CP+    +  + N+ DC         +C+  +  F          P+    +  C  
Sbjct: 245 SCSCPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFECKCPPGFVGPRCEGDINECLS 304

Query: 316 IP--ELAVWDADRNI----CRFFAG-IGETCE------VDSDCLAGELEIQCVKDEAGQG 362
            P       D  + +    C    G +G  CE        S C  G +   C    AG  
Sbjct: 305 NPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGV---CTTIHAGHK 361

Query: 363 YCTCPEDLIAVDGLCVTSGLVLGEACQVS-LECSGTENAVCTDGVCSCNTGYQQVDDFCA 421
            CTCPE                G+ C+ S  +C    N     GVC  + G   + D  +
Sbjct: 362 -CTCPEGFY-------------GKNCEFSGYDCDS--NPCQNGGVCRISDGGGYICDCPS 405

Query: 422 PVIGGTCSVDSDCVIPNTACFEIDNSMTCQCKERFVAYDDECWPNVDG 469
              G  C +D+     +  C  +D      C+++   Y   C P   G
Sbjct: 406 GTNGTNCEIDTINECDSNPCKHLD----AICQDKLGDYACYCPPKHTG 449


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 198 EGQFCDLNNPCPSPYQCSKFSSCV 221
           EG  C++N    SP  C    SCV
Sbjct: 99  EGALCNINTDDCSPNPCRNNGSCV 122


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.139    0.482 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,599
Number of Sequences: 317
Number of extensions: 6951
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 565
length of database: 114,650
effective HSP length: 60
effective length of query: 505
effective length of database: 95,630
effective search space: 48293150
effective search space used: 48293150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)