Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001745-TA|BGIBMGA001745-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (306 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.70 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   1.2  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 244 GKDTCQGDSGSPLQVASKDNQCIFHVVGVTSFGRRCAESGYPAIYTR 290
           G   C  + G PL+   + ++  F    +    +    + YP IYTR
Sbjct: 204 GVSDCDSEPGIPLKRKQRRSRTTFTAHQLDELEKAFERTQYPDIYTR 250


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 228 WQGFAATQMCAGELRGGKDTCQGDSGSPLQVASKDNQCIFHVVGVTSFGRRC-----AES 282
           W G A  Q+C G L   + T   D    +    K   C     G    G+ C      + 
Sbjct: 119 WNGTATEQLCIGGLLYNERTHSCDWPENVDGCQKHPLCNDDPNGNVPLGKSCNRYWQCQG 178

Query: 283 GYPAI 287
           GYP +
Sbjct: 179 GYPRL 183


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,779
Number of Sequences: 317
Number of extensions: 2911
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 306
length of database: 114,650
effective HSP length: 57
effective length of query: 249
effective length of database: 96,581
effective search space: 24048669
effective search space used: 24048669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)