Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001742-TA|BGIBMGA001742-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_20626| Best HMM Match : DSL (HMM E-Value=2.2e-19)                   29   7.1  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 14   SAGAGGVYADTVQLDPHDT-SDDKIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDP 68
            S GAG  ++   QL P    + + +  +   V R RG+ R++    QL R+LY+ P
Sbjct: 1943 SNGAGVGFSFPTQLGPSTRYTKEDVSRLIDRVRRQRGYQRNVQMGMQLARQLYTAP 1998


>SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1419

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 24  TVQLDPHDTSDDKIHTMFQEVERMRGWIRDLDD 56
           T   DP D  DD+++ +F E+E +   +R++++
Sbjct: 407 TYSFDPEDDVDDRLNAIFAEIEDLERLLREIEN 439


>SB_20626| Best HMM Match : DSL (HMM E-Value=2.2e-19)
          Length = 323

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 173 CNTATQRQVCRQVYTGPLQHYELTSPNALTAPN 205
           C+  T R++CR+ +TGP     L +P  +  P+
Sbjct: 85  CDVMTGRKICRRGWTGPSCDVILRNPTPMIQPS 117


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 31  DTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDPNYH 71
           DT+ + +H +  E+ER +  I DL+   +L      + +YH
Sbjct: 547 DTNVEYVHNLQDEIERYKSKINDLEKELELKTSEKQNVDYH 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,344
Number of Sequences: 59808
Number of extensions: 293334
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 16,821,457
effective HSP length: 83
effective length of query: 255
effective length of database: 11,857,393
effective search space: 3023635215
effective search space used: 3023635215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)