Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001742-TA|BGIBMGA001742-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56300.1 68414.m06472 DNAJ heat shock N-terminal domain-conta...    30   2.5  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    29   3.4  
At3g03800.1 68416.m00390 syntaxin, putative (SYP131) similar to ...    29   4.5  
At4g22070.1 68417.m03192 WRKY family transcription factor identi...    28   7.8  

>At1g56300.1 68414.m06472 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI7 DnaJ
           homolog subfamily B member 8 Mus musculus; contains Pfam
           profile: PF00226: DnaJ domain
          Length = 156

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 28  DPHDTSDDKIHTMFQEVERMRGWIRDLDDNTQLVRRLYSD 67
           DPH+  DD      QE+  M   ++D  ++ + ++R+++D
Sbjct: 84  DPHEDDDDDFCDFMQEMISMMNNVKDAGESLEDLQRMFTD 123


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 35  DKIHTMFQEVERMRGWIRDLDDNTQLVRRLYSDPNYHTNRQLQEQLDRAVTQSNALGL 92
           D++HTMF  +   R  +  L D    +  LY+ P     R  +E L+     +N LG+
Sbjct: 312 DRLHTMFLAMADARAVLIKLADRLHNMMTLYALPPVKRQRFAKETLEIFAPLANRLGI 369


>At3g03800.1 68416.m00390 syntaxin, putative (SYP131) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 306

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 276 DQIDSVEYYALQATEHVECGGQQLLKGTVTRTKARK 311
           + +D++E     A +HV+ G  QL K   ++  +RK
Sbjct: 241 EMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRK 276


>At4g22070.1 68417.m03192 WRKY family transcription factor identical
           to WRKY transcription factor 31 (WRKY31) GI:15990589
           from [Arabidopsis thaliana]
          Length = 538

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 73  NRQLQEQLDRAVTQSNALGLKVCGALRQFETR 104
           N++L++ L +A T  NAL +++   +RQ E R
Sbjct: 125 NQRLRDMLSQATTNFNALQMQLVAVMRQQEQR 156


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,984,637
Number of Sequences: 28952
Number of extensions: 190379
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 4
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)