Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001724-TA|BGIBMGA001724-PA|undefined
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    33   0.31 
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    30   2.9  
At1g63530.1 68414.m07182 hypothetical protein                          30   2.9  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    30   3.8  
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family...    30   3.8  
At1g67310.1 68414.m07661 calmodulin-binding protein similar to a...    29   6.6  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    29   8.7  

>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 264 PQESNVKFVYGQAPAGTFLVKPGQVRFPRPQPILVRPGKITLP 306
           P  +    ++G AP G  +   G +R+P P P +VRPG I  P
Sbjct: 118 PMANGYPGIHGVAPPGA-MPPHGLLRYPSPYPTMVRPGFIMRP 159


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 79  APITPPPVLARPKPLAPINPPAI 101
           AP +PPP  A P P AP++PP +
Sbjct: 135 APASPPPAPASPPP-APVSPPPV 156


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 263 SPQESNVKFVYGQAPAGTFLVKPGQVRFPRPQPILVRPGKITLPTPPS 310
           SP +S+  F +G APA T  V  G      P PI   P     P PPS
Sbjct: 64  SPVQSSSSFSFGSAPAATTSV--GVSSTSTPTPISFLPFGYVPPPPPS 109


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 284 KPGQVRFPRPQPILVRPGKITLPTPPSIYVRPASV 318
           KP ++  P P P+   P KI  P P  +Y  P  +
Sbjct: 249 KPPKIEHPPPVPVYKPPPKIEKPPPVPVYKPPPKI 283


>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
           protein Common family member:At3g26910 [Arabidopsis
           thaliana]
          Length = 623

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 387 VVSLPRISVP--AAPTICFSPNPIYRVHTIGTPSIKSVSRNFDFNGYNQPLCTNS--CSQ 442
           V  LP++S    A+PT   +P  I  +H +  P  +S +++    GY+ PL + S   S+
Sbjct: 485 VSKLPKVSSSPTASPTFVSTPK-ISELHELPRPPPRSSTKSSRELGYSAPLVSRSQLLSK 543

Query: 443 PICPNSGN 450
           P+  NS +
Sbjct: 544 PLITNSAS 551


>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1035

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 256 VVDLHACSPQESNVKFVYGQAPAGTFLVKPGQVRFPRPQPILVRPGKITL 305
           ++    C P ES    ++G A     ++K G +R   PQ     PGK+ L
Sbjct: 485 IIGSFLCDPTESTWSCMFGNAQVPFEIIKEGVIRCEAPQ---CGPGKVNL 531


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 391 PRISVPAAPTICFSPN----PIYRVHTIGTPSIKSVSRNFDFNGYNQP 434
           P  ++ + P   FSP     P +     G  S  S SR+F FNG   P
Sbjct: 534 PASTIGSRPNAAFSPPTVSPPAHGCTACGATSSSSASRHFTFNGATSP 581


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,866,226
Number of Sequences: 28952
Number of extensions: 274377
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 25
length of query: 468
length of database: 12,070,560
effective HSP length: 84
effective length of query: 384
effective length of database: 9,638,592
effective search space: 3701219328
effective search space used: 3701219328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)