Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3633| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_28168| Best HMM Match : Myb_DNA-binding (HMM E-Value=3)             33   0.29 
SB_35432| Best HMM Match : HALZ (HMM E-Value=1.3)                      33   0.29 
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_17228| Best HMM Match : DivIVA (HMM E-Value=2.5)                    31   0.89 
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 29   4.7  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_3633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           RS  ++K  W+NL ++ K   +  KR+R KTGGG      P+P S+    I  E
Sbjct: 211 RSLVEVKDKWENLLSQAKRENSEFKRERGKTGGGPA----PKPPSAATAKIIEE 260


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           RS  ++K  W NL ++ K   +  KR+R KTGGG      P+P S+    I  E
Sbjct: 755 RSLVEVKDKWKNLLSQAKRENSEFKRERGKTGGGPA----PKPPSAATAKIIEE 804


>SB_28168| Best HMM Match : Myb_DNA-binding (HMM E-Value=3)
          Length = 121

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           RS  ++K  W NL ++ K   +  KR+R KTGGG      P+P S+    I  E
Sbjct: 63  RSLVEVKDKWKNLLSQAKRENSEFKRERGKTGGGPA----PKPPSAATAKIIEE 112


>SB_35432| Best HMM Match : HALZ (HMM E-Value=1.3)
          Length = 206

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           RS  ++K  W NL ++ K   +  KR+R KTGGG      P+P S+    I  E
Sbjct: 63  RSLVEVKDKWKNLLSQAKRENSEFKRERGKTGGGPA----PKPPSAATAKIIEE 112


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           +S  ++K  W+NL ++ K   +  +R+R KTGGG      P+P S+    I  E
Sbjct: 61  QSLVEVKDKWENLLSQAKRETSEFERERGKTGGGPA----PKPPSAATAKIIEE 110


>SB_17228| Best HMM Match : DivIVA (HMM E-Value=2.5)
          Length = 160

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAE 57
           RS  ++K  W NL ++ K   +  KR R KTGGG      P+P S+    I  E
Sbjct: 63  RSLVEVKDKWKNLFSQAKRESSEFKRVRGKTGGGPA----PKPPSAATAKIIEE 112


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 114 QKKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCRNVAGTTP 160
           +KKE E   K  E+   + K ++E  E +KK  QAK +  N   T P
Sbjct: 391 RKKEEEINAKIEEKKKREEKKKQEEEEKMKKKEQAKNNFVNFFITAP 437


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 34   TGGGQCIPNEPQPGSSNETLIFAEVLLDQTDVELRGVIDSDTI 76
            T GGQ  PNE +   S  TL+ A   L++   EL   + SD++
Sbjct: 1477 TTGGQSPPNEAKQNKSGITLVEASKELERETGELVKDVQSDSL 1519


>SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 121 MMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCRNVAGTTPMHYSLSC 167
           +M  A  ++  A    E+ E +  + +A   CR+  G TP+H++ +C
Sbjct: 20  LMLIALSLFKAANGHDESVEALL-HKEADVLCRDCTGRTPIHFAAAC 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,507,933
Number of Sequences: 59808
Number of extensions: 182538
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 16,821,457
effective HSP length: 80
effective length of query: 167
effective length of database: 12,036,817
effective search space: 2010148439
effective search space used: 2010148439
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)