Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03140.1 68414.m00291 splicing factor Prp18 family protein co...    29   3.9  
At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    28   6.8  

>At1g03140.1 68414.m00291 splicing factor Prp18 family protein
          contains Pfam profile: PF02840 Prp18 domain
          Length = 420

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 3  KRSEAQLKKCWD-NLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSN 50
          KRSE + KK      + RR+H L  ++R      GG    +   PGSSN
Sbjct: 26 KRSEIEQKKIQKLREEERREHELKAQRRAAAAASGGDGKSSGSAPGSSN 74


>At4g19900.1 68417.m02916 glycosyl transferase-related contains
          Pfam profiles PF01535: PPR repeat, PF04572: Alpha
          1,4-glycosyltransferase conserved region, PF04488:
          Glycosyltransferase sugar-binding region containing DXD
          motif; several hypothetical proteins - Arabidopsis
          thaliana
          Length = 1302

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 41 PNEPQPGSSNETLIFAE-VLLDQTDVELRG 69
          PN  + GSS +T++F + VL+  +DVE  G
Sbjct: 43 PNHLRSGSSEDTVLFPDSVLVSDSDVETTG 72


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,897,081
Number of Sequences: 28952
Number of extensions: 130294
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 12,070,560
effective HSP length: 79
effective length of query: 168
effective length of database: 9,783,352
effective search space: 1643603136
effective search space used: 1643603136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)