Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001714-TA|BGIBMGA001714-PA|IPR000418|Ets
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa...    30   2.3  
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa...    30   2.3  
At4g13880.1 68417.m02150 leucine-rich repeat family protein cont...    29   3.1  
At1g36310.1 68414.m04513 expressed protein                             29   4.0  
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain...    29   5.3  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    28   7.1  
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family...    28   9.3  

>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 31  YEHAHTHAPPHLYRTHTHAPPDGQTQPHA 59
           Y+H   H PPH Y  H+ AP      P+A
Sbjct: 85  YDHHLQHHPPHPYHNHSWAPVAMARYPYA 113


>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 388

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 31  YEHAHTHAPPHLYRTHTHAPPDGQTQPHA 59
           Y+H   H PPH Y  H+ AP      P+A
Sbjct: 85  YDHHLQHHPPHPYHNHSWAPVAMARYPYA 113


>At4g13880.1 68417.m02150 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 725

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 57  PHACGIPF-SKCNEDEEAREEPVSSSEPHHRWDEKLGLIF 95
           P  CG PF +KC  +EE  EE     E      E+   +F
Sbjct: 661 PGLCGAPFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQVF 700


>At1g36310.1 68414.m04513 expressed protein
          Length = 404

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 2   SQQPHALPWSLHYQYRECGGSLAPCRESFYEHAHTHAPPHLYRTHTHAPPDGQTQPHACG 61
           SQQ + +PW L Y   E  G+ A    S            +Y  + H   +G+ +  A G
Sbjct: 317 SQQEYFVPWHLPYHRAEVSGASASALASGLAKKDDRKGAVVYNRYYHVFSEGELERLASG 376

Query: 62  I 62
           +
Sbjct: 377 V 377


>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 751

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 41  HLYRTHTHAPPDGQTQPHACGIPFSKCNEDEEAREEPVSSSEPHHRWDE 89
           HL+RTH    PD     H  G+    C+   EA EE V+S +    +D+
Sbjct: 456 HLFRTHVGIDPDAHIDLHELGMEL--CS---EALEETVTSEKAQPLFDK 499


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
          family protein similar to arabinogalactan protein
          [Daucus carota] GI:11322245; contains Pfam profile
          PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 22 SLAPCRESFYEHAHTHA-PPHLYRTHTHAPP 51
          SLAP     Y H H H  PPH +  H H  P
Sbjct: 35 SLAPAPAP-YHHGHHHPHPPHHHHPHPHPHP 64


>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
           protein similar to SWISS-PROT:Q15428
          Length = 277

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 132 SFEVIVSIILYTIEPDYTAHCTGK--QLAVCDAARRVEPDRPRQP-AARHHYTFRYTHSV 188
           S+E  + + L+  E +Y AH  GK  Q  +   A R   D P +P   + + + R T  +
Sbjct: 51  SYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKRNVSVRRTVKI 110

Query: 189 PARGVAVSRK-AVDLGRQLILF 209
              G  V+++   +L ++ +LF
Sbjct: 111 GRPGYRVTKQYDPELQQRSLLF 132


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,031,640
Number of Sequences: 28952
Number of extensions: 263909
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 7
length of query: 314
length of database: 12,070,560
effective HSP length: 81
effective length of query: 233
effective length of database: 9,725,448
effective search space: 2266029384
effective search space used: 2266029384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)