Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.43 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.43 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.43 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.43 

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 129 KDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSN-IKEAITVFEKFL 187
           +D+SA     K L   DPDY           A  +     DET+V+  +K  +   ++  
Sbjct: 589 EDQSARRVAQKYLRVVDPDYYEFETHIFFDDAFEISDHNDDETQVNRFVKLLVATIDEAA 648

Query: 188 DDFESLHL 195
            D    H+
Sbjct: 649 SDVHQTHM 656


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 129 KDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSN-IKEAITVFEKFL 187
           +D+SA     K L   DPDY           A  +     DET+V+  +K  +   ++  
Sbjct: 589 EDQSARRVAQKYLRVVDPDYYEFETHIFFDDAFEISDHNDDETQVNRFVKLLVATIDEAA 648

Query: 188 DDFESLHL 195
            D    H+
Sbjct: 649 SDVHQTHM 656


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 129 KDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSN-IKEAITVFEKFL 187
           +D+SA     K L   DPDY           A  +     DET+V+  +K  +   ++  
Sbjct: 589 EDQSARRVAQKYLRVVDPDYYEFETHIFFDDAFEISDHNDDETQVNRFVKLLVATIDEAA 648

Query: 188 DDFESLHL 195
            D    H+
Sbjct: 649 SDVHQTHM 656


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 129 KDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSN-IKEAITVFEKFL 187
           +D+SA     K L   DPDY           A  +     DET+V+  +K  +   ++  
Sbjct: 589 EDQSARRVAQKYLRVVDPDYYEFETHIFFDDAFEISDHNDDETQVNRFVKLLVATIDEAA 648

Query: 188 DDFESLHL 195
            D    H+
Sbjct: 649 SDVHQTHM 656


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,969
Number of Sequences: 317
Number of extensions: 2226
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 328
length of database: 114,650
effective HSP length: 57
effective length of query: 271
effective length of database: 96,581
effective search space: 26173451
effective search space used: 26173451
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)