Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001435-TA|BGIBMGA001435-PA|IPR000884|Thrombospondin,
type I, IPR010294|ADAM-TS Spacer 1
         (476 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   6.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   8.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   8.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 74  GWGPWSEWSECSRTCGAGVSTQSRE-CNNPEPVNNGNYC 111
           G  PW+  +  +R     +     E CNNPE + +G  C
Sbjct: 521 GINPWANCTASTRCWEVFMDGICNEDCNNPECLFDGRDC 559


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 214 DSDVEEDACGVCGGDGTACKTVQGIY 239
           D  VE+D  G C    T C     +Y
Sbjct: 608 DDRVEQDTSGTCSDGDTFCGIKDKLY 633


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 263  KIQEKVSP-GNYISIGSTKSRRMFLNGARNATLTEYFVAGAQAIYERDRDWEKV 315
            ++ E   P G  +S   + SRR+   G    TL++Y    A   Y+    W+K+
Sbjct: 1971 ELHEAFKPKGWLLSAAVSPSRRVVDAGYDVPTLSKYLDWIAVMCYDYHGQWDKI 2024


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 7   QCHLQFGAEAGLCSKLSELCEHLWCLVDNVCTTMMRPAAPGTTCGPDMWCQNQTCVARTP 66
           +C+ + G +   CS     C+H  C     C  + +       C PD W    T ++++P
Sbjct: 129 ECNCKNGWKGKTCSLKDSHCDHTTCKNGGTCQDLGKTFM--CRCPPD-W--EGTTLSQSP 183

Query: 67  S 67
           +
Sbjct: 184 N 184


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,895
Number of Sequences: 317
Number of extensions: 6208
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 476
length of database: 114,650
effective HSP length: 59
effective length of query: 417
effective length of database: 95,947
effective search space: 40009899
effective search space used: 40009899
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)