Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001435-TA|BGIBMGA001435-PA|IPR000884|Thrombospondin,
type I, IPR010294|ADAM-TS Spacer 1
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05660.1 68414.m00587 polygalacturonase, putative / pectinase...    38   0.019
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu...    33   0.31 
At5g23450.2 68418.m02752 diacylglycerol kinase family protein co...    32   0.72 
At5g23450.1 68418.m02751 diacylglycerol kinase family protein co...    32   0.72 
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e...    30   3.9  
At4g30720.1 68417.m04354 expressed protein hypothetical protein ...    30   3.9  
At1g68030.1 68414.m07772 PHD finger protein-related contains low...    29   6.7  

>At1g05660.1 68414.m00587 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 208 GCDWIVDSDVEEDACGVCGG-DGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRNVKIQE 266
           GC  +V  +V+  A G     DG   +   G+   G+T Q+G   VAI P G+RN+ I +
Sbjct: 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGP-GTRNLLITK 233

Query: 267 KV-SPGNYISIGSTKSRRMFLNGARNATLTEYFVAGAQ 303
               PG+ +SIGS  ++ +  +G  N T++     G+Q
Sbjct: 234 LACGPGHGVSIGSL-AKELKEDGVENVTVSSSVFTGSQ 270


>At5g28530.1 68418.m03478 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 685

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 395 YHIEPPRHQALMKQCRKPACVHWWVGAWNPCSKLCHMPGEEVTKERSVYCVDKVMNKVVD 454
           + + P RH AL+  CR          +W PC    H   + +T E ++  +D  + +VVD
Sbjct: 429 FGLVPDRHAALLYSCR---------ASWLPCCIREHFVAQTMTSEFNL-SIDSFLKRVVD 478

Query: 455 DSECGQVI 462
            + C Q++
Sbjct: 479 GATCMQLL 486


>At5g23450.2 68418.m02752 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 213 VDSDVEEDACGVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRN 261
           VD ++  D     GGDG   + + G+ T+   ++     + I+PAGS N
Sbjct: 300 VDINLCSDGIICVGGDGIINEVLNGLLTRSNPKEGVSIPIGIVPAGSDN 348


>At5g23450.1 68418.m02751 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 213 VDSDVEEDACGVCGGDGTACKTVQGIYTKGTTRQSGFSEVAIIPAGSRN 261
           VD ++  D     GGDG   + + G+ T+   ++     + I+PAGS N
Sbjct: 300 VDINLCSDGIICVGGDGIINEVLNGLLTRSNPKEGVSIPIGIVPAGSDN 348


>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 296

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 13  GAEAGLCSKLSELCEHL--WCLVDNVCTTMMRPAAPGTTCGPDMWC 56
           G+  G C ++  +CEH   WCL  ++  T      P  T   D WC
Sbjct: 120 GSRCGACYEI--MCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWC 163


>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803),PIR2:S76076
          Length = 749

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 270 PGNYISIGSTKSRRMFLNGARNATLTEYFVAGAQAIYERDRDWEKVRISGPLAEDIKVYQ 329
           PG  + + ST    + +NG   +  +  +   A  +    +D++ + + GPLA  I+ +Q
Sbjct: 529 PGGQVVLTSTNPTELCINGMSFSRRSSKWANAALVVTVSAKDFDVLNLKGPLA-GIE-FQ 586

Query: 330 RIFRGRHRNPGVTYQYTVDKQRLHKKHSYRLSEWTP 365
           R F  R    G    +TV  QR+      +LSE TP
Sbjct: 587 REFERRAAIMG-GGDFTVPVQRVTDFLQNKLSE-TP 620


>At1g68030.1 68414.m07772 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 314

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 23  SELCEH-LWCLVDNVCTTMMRPAAPGTT 49
           SE CE+ L C++D +  + ++P APG T
Sbjct: 93  SESCEYVLQCILDEIPLSELKPGAPGLT 120


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,701
Number of Sequences: 28952
Number of extensions: 604299
Number of successful extensions: 1076
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 8
length of query: 476
length of database: 12,070,560
effective HSP length: 84
effective length of query: 392
effective length of database: 9,638,592
effective search space: 3778328064
effective search space used: 3778328064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)