Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001434-TA|BGIBMGA001434-PA|undefined
         (110 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            93   3e-20
SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)          68   1e-12
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-06
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 40   3e-04
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          34   0.030
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 31   0.28 
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                28   1.5  
SB_4805| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.6  
SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)        27   3.4  
SB_15903| Best HMM Match : Gate (HMM E-Value=6)                        27   4.5  
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 26   7.9  

>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNYXXXXXXXXXXXXXXXXXXXXXXSTNAD 60
           M EFH   +LE YLLT+MNMV+++Y D SIGN                         +A 
Sbjct: 207 MHEFHGA-ALEEYLLTVMNMVNNIYRDQSIGN--AINIVVVRIIILKRDLPDLDIGHHAG 263

Query: 61  STLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDICSQHDSPCSLL 106
           +T+ SFC W  ++NP +DT+P HHDVA+LVTR+DIC   D PC  L
Sbjct: 264 NTIESFCAWASRVNPRSDTHPKHHDVAVLVTRKDICKGIDEPCGTL 309


>SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)
          Length = 571

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 4   FHDQDSLEIYLLTIMNMVSSLYMDPSIGNYXXXXXXXXXXXXXXXXXXXXXXSTNADSTL 63
           F  +  L+ +++TIM MV+ +Y D +IGN                       ++NA S+L
Sbjct: 12  FPSKAELQSFIITIMGMVARIYRDKTIGN--SINIVLVKIIILEIDLPELEITSNAASSL 69

Query: 64  ASFCRWQEQLNPDNDTNPHHHDVAILVTRRDIC 96
            SFC+WQ ++N  +D  P H D AIL+TR DIC
Sbjct: 70  RSFCKWQTKMNKPSDEEPGHFDTAILLTRTDIC 102


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 58  NADSTLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDICSQHDSPCSLL 106
           +A +TL SF +W E+ N   D + +H+D A L TR +IC   + PC  L
Sbjct: 832 HASNTLESFGKWAERNNNPLDNDENHYDYATLFTRYNICKDKNQPCDTL 880


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 2   SEFHDQDSLEIYLLTIMNMVSSLYMDPSIG-NYXXXXXXXXXXXXXXXXXXXXXXS-TNA 59
           SEF+   +++ Y+  + NMV+ LY DPS G N                       +  + 
Sbjct: 188 SEFYKDRAVD-YIANLANMVNRLYADPSTGMNLTAVLVKVIIIQREEPFLNFTKHNIRSG 246

Query: 60  DSTLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDICSQHDSPCSL 105
            S L  F  W EQ N      P H D A+L+T+R IC   D  CSL
Sbjct: 247 GSYLNRFSLWAEQHN-SPPAAPEHFDNAVLITKR-ICGLAD--CSL 288


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNY 33
           M  FH  DS+E Y+LT+MNMV  + + P++  +
Sbjct: 83  MVGFHGNDSIEEYVLTVMNMVWYIVIRPNLKGF 115


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 56  STNADSTLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDICSQHD 100
           S +    +A+   W     P  D+N  H DV +LVT  D+C++ D
Sbjct: 232 SASKGDRIAALGTWMGTNIPSEDSNSAHADVVVLVT-GDLCTELD 275


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 2   SEFHDQDSLEIYLLTIMNMVSSLYMDPSIG 31
           ++F+   S++ Y+L I NM + LY D S+G
Sbjct: 116 TDFYGDKSMD-YVLAIANMANRLYADKSVG 144


>SB_4805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 56 STNADSTLASFCRWQEQLNPDNDTNPHHHDVAILVT 91
          S ++ + L +   W     P +D++P H DVA+LV+
Sbjct: 24 SASSYTRLDALGSWASANLPSDDSDPAHADVAVLVS 59


>SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)
          Length = 511

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 70  QEQLNPDNDTNPHHHDVAILVTR 92
           Q Q+NP++D +P H D  +   R
Sbjct: 331 QNQINPESDDDPDHFDALVFNAR 353


>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
          Length = 444

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58  NADSTLASFCRWQEQLNPDNDTNPHHHD 85
           +A S+ +S CRW E     +D+   HHD
Sbjct: 331 SAPSSPSSDCRWVESPESGDDSASTHHD 358


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 56  STNADSTLASFCRWQEQLNPDNDTNPHHHDVAILVT 91
           S  +   L++  +W     P +D+N  H DV +L++
Sbjct: 213 SATSGERLSALGKWASTNLPTDDSNAAHPDVIVLIS 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,449
Number of Sequences: 59808
Number of extensions: 77627
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 11
length of query: 110
length of database: 16,821,457
effective HSP length: 72
effective length of query: 38
effective length of database: 12,515,281
effective search space: 475580678
effective search space used: 475580678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)