Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
         (636 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   1.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   8.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   8.5  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 334 TFTMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREK 379
           T T ++ W  + +R L+++ K   +   +T+   +    D  DREK
Sbjct: 127 TLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDREK 172


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 105 SFGEALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIKP 145
           S G     S T +NKTF      G QGR + +   +   +P
Sbjct: 86  SAGSIPGASSTPENKTFPSIQVMGYQGRAVVVVSCVTKDEP 126


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 335 FTMLNIWQCDKKRVLEEDRKRI 356
           FT+L  W C   RV  ED K I
Sbjct: 285 FTIL--WNCQNTRVASEDFKAI 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,003
Number of Sequences: 317
Number of extensions: 6184
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 636
length of database: 114,650
effective HSP length: 61
effective length of query: 575
effective length of database: 95,313
effective search space: 54804975
effective search space used: 54804975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)