BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine ligase (636 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical ... 159 4e-39 AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical ... 159 4e-39 Z47357-10|CAI46580.1| 563|Caenorhabditis elegans Hypothetical p... 157 3e-38 Z47357-9|CAA87425.3| 601|Caenorhabditis elegans Hypothetical pr... 157 3e-38 Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical pr... 150 3e-36 Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical pr... 134 2e-31 Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical pr... 39 0.009 Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical p... 39 0.009 Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical pr... 36 0.066 U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 33 0.81 U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 33 0.81 U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 31 1.9 U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 31 1.9 Z68316-5|CAL49438.1| 326|Caenorhabditis elegans Hypothetical pr... 30 4.3 Z14092-11|CAI46627.1| 817|Caenorhabditis elegans Hypothetical p... 30 5.7 Z14092-5|CAD45600.1| 816|Caenorhabditis elegans Hypothetical pr... 30 5.7 Z14092-4|CAD45599.1| 820|Caenorhabditis elegans Hypothetical pr... 30 5.7 Z14092-3|CAA78473.3| 754|Caenorhabditis elegans Hypothetical pr... 30 5.7 AF036688-1|AAB88316.1| 225|Caenorhabditis elegans Hypothetical ... 30 5.7 >AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical protein H23L24.3a protein. Length = 535 Score = 159 bits (387), Expect = 4e-39 Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 10/207 (4%) Query: 121 FIIKPECGSQGRGIYLTKSLKDIKPSD-KLICQVYLSKPFLV-DGYKFDIRVYTLITSCD 178 FI+KP+ G+QG GIYL S I+ D + + Q Y++ P L+ D KFD RVY +I S + Sbjct: 75 FIVKPDEGAQGTGIYLINSPNQIRNVDQRQLVQEYVADPLLMNDKLKFDFRVYGVIKSIN 134 Query: 179 PLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVY-----DSEAGSK 233 PL I+V EG+ RF T +Y P+++N N++ HLTNY+LNK + YV+ D GSK Sbjct: 135 PLSIYVAREGMARFCTEKYEKPDSSNFKNLYAHLTNYSLNKANEAYVHSNTLQDQTRGSK 194 Query: 234 RKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAWP-ILKHSYHACFPSHDMVHACFEI 292 R +ST+ L S+GV +LWH I ++VKT ++ P I+ H H + S CF+I Sbjct: 195 RLLSTVFHQLESRGVKTKRLWHDIKLILVKTTLAMLPEIMLHYEHHFYDSTG--PQCFQI 252 Query: 293 LGFDILLDHKLHPYILEVNHSPSFHTD 319 +GFD+++ P +LEVN +PS D Sbjct: 253 MGFDVMIREDGTPILLEVNAAPSLTAD 279 >AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical protein H23L24.3b protein. Length = 707 Score = 159 bits (387), Expect = 4e-39 Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 10/207 (4%) Query: 121 FIIKPECGSQGRGIYLTKSLKDIKPSD-KLICQVYLSKPFLV-DGYKFDIRVYTLITSCD 178 FI+KP+ G+QG GIYL S I+ D + + Q Y++ P L+ D KFD RVY +I S + Sbjct: 247 FIVKPDEGAQGTGIYLINSPNQIRNVDQRQLVQEYVADPLLMNDKLKFDFRVYGVIKSIN 306 Query: 179 PLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVY-----DSEAGSK 233 PL I+V EG+ RF T +Y P+++N N++ HLTNY+LNK + YV+ D GSK Sbjct: 307 PLSIYVAREGMARFCTEKYEKPDSSNFKNLYAHLTNYSLNKANEAYVHSNTLQDQTRGSK 366 Query: 234 RKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAWP-ILKHSYHACFPSHDMVHACFEI 292 R +ST+ L S+GV +LWH I ++VKT ++ P I+ H H + S CF+I Sbjct: 367 RLLSTVFHQLESRGVKTKRLWHDIKLILVKTTLAMLPEIMLHYEHHFYDSTG--PQCFQI 424 Query: 293 LGFDILLDHKLHPYILEVNHSPSFHTD 319 +GFD+++ P +LEVN +PS D Sbjct: 425 MGFDVMIREDGTPILLEVNAAPSLTAD 451 >Z47357-10|CAI46580.1| 563|Caenorhabditis elegans Hypothetical protein ZK1128.6b protein. Length = 563 Score = 157 bits (380), Expect = 3e-38 Identities = 82/235 (34%), Positives = 136/235 (57%), Gaps = 6/235 (2%) Query: 108 EALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIKPSDKLICQVYLSKPFLVDGYKFD 167 E L Y +T ++ I+KP ++G GI +T+ KD + L+ Q Y+ +P ++ KFD Sbjct: 200 ELLKYLETDASRHVIVKPPASARGTGISVTRKPKDFPTTATLVAQHYIERPLTINRAKFD 259 Query: 168 IRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVYD 227 +R+Y + + +PLR+++Y++GLVRFA+ Y+ + + +N +MHLTNY++NK + Sbjct: 260 LRLYAYVPTFEPLRVYIYDQGLVRFASVPYSH-SVSTISNKYMHLTNYSINKLAEADGVA 318 Query: 228 SEAGSKRKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISA-WPILKHSYHACFPSHDMV 286 ++ K + L + GVD +K+ I+EVI+K IS PI +H + F + + Sbjct: 319 NKPVPKWTLHHLWEHFDEMGVDREKIQREIEEVIIKAFISTEKPIREHM--SRFLEQEFI 376 Query: 287 HACFEILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTFTMLNIW 341 C+E+ G DI+LD P++LEVN SPS H+ T LD VK L D + ++ Sbjct: 377 --CYELFGIDIILDEDYKPWLLEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVY 429 >Z47357-9|CAA87425.3| 601|Caenorhabditis elegans Hypothetical protein ZK1128.6a protein. Length = 601 Score = 157 bits (380), Expect = 3e-38 Identities = 82/235 (34%), Positives = 136/235 (57%), Gaps = 6/235 (2%) Query: 108 EALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIKPSDKLICQVYLSKPFLVDGYKFD 167 E L Y +T ++ I+KP ++G GI +T+ KD + L+ Q Y+ +P ++ KFD Sbjct: 238 ELLKYLETDASRHVIVKPPASARGTGISVTRKPKDFPTTATLVAQHYIERPLTINRAKFD 297 Query: 168 IRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVYD 227 +R+Y + + +PLR+++Y++GLVRFA+ Y+ + + +N +MHLTNY++NK + Sbjct: 298 LRLYAYVPTFEPLRVYIYDQGLVRFASVPYSH-SVSTISNKYMHLTNYSINKLAEADGVA 356 Query: 228 SEAGSKRKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISA-WPILKHSYHACFPSHDMV 286 ++ K + L + GVD +K+ I+EVI+K IS PI +H + F + + Sbjct: 357 NKPVPKWTLHHLWEHFDEMGVDREKIQREIEEVIIKAFISTEKPIREHM--SRFLEQEFI 414 Query: 287 HACFEILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTFTMLNIW 341 C+E+ G DI+LD P++LEVN SPS H+ T LD VK L D + ++ Sbjct: 415 --CYELFGIDIILDEDYKPWLLEVNISPSLHSGTPLDVSVKAPLAKDVLNLAGVY 467 >Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical protein C55A6.2 protein. Length = 677 Score = 150 bits (363), Expect = 3e-36 Identities = 87/261 (33%), Positives = 149/261 (57%), Gaps = 14/261 (5%) Query: 121 FIIKPECGSQGRGIYLTKSLKDIKPSDKLICQVYLSKPFLVDGYKFDIRVYTLITSCDPL 180 FI+KP QG+GI+ S+ DI L+ YL P+LV+ +KFD+R+Y +TS PL Sbjct: 194 FIVKPTNSRQGKGIFFANSMADIPAEGPLLVSRYLKDPYLVNNHKFDLRIYVAVTSFYPL 253 Query: 181 RIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVYD-----SEAGSKRK 235 +VY+EGL R A+ Y ++ +N ++HLTNY++NK+S ++V + + G K Sbjct: 254 VAYVYSEGLARLASRPYDTSASSADSNEYVHLTNYSINKNSTSFVRNESMSSEDLGHKWT 313 Query: 236 ISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAWPILKHSYHACFPSHDMVHAC--FEIL 293 + L + + ++G D L I+++IVK+++S +++S A ++ AC FE+ Sbjct: 314 LGALLRYVENEGKDAKLLMLRIEDLIVKSLLS----IQNSV-ATASRTNLRFACTNFELF 368 Query: 294 GFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTFTMLNIWQCDKKRVLEEDR 353 GFD+L+D L P++LEVN SPS D LD +K L+ D + + D+K +++ Sbjct: 369 GFDVLVDQALKPWLLEVNLSPSLACDAPLDSLLKTRLIADLLNLACVPLLDRK-IIDSVT 427 Query: 354 KRIRDRL-LQTNKYAETTTID 373 +R + Q ++ +ET ++ Sbjct: 428 PALRKSMNSQESESSETDDLE 448 >Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical protein F25C8.5 protein. Length = 417 Score = 134 bits (323), Expect = 2e-31 Identities = 89/274 (32%), Positives = 142/274 (51%), Gaps = 31/274 (11%) Query: 112 YSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIKPSDK----------LICQVYLSKPFLV 161 + K + +I+KP G+QG+GI+L + LK ++ K + Q Y+ P+LV Sbjct: 138 FRKYPNDTIWIMKPVAGAQGKGIFLFRKLKHVQEWKKKDSSGSEALPYVVQCYVHNPYLV 197 Query: 162 DGYKFDIRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHS 221 G KFD+R+Y L+TS PL +V+ EG RF+ SRY + ++ + F+HLTN A+ K + Sbjct: 198 GGKKFDVRIYVLVTSFRPLNAWVHREGFARFSHSRY---STDSVDDAFVHLTNVAVAKTA 254 Query: 222 RTYVYDSEAGSKRKISTLNKILLS-QGVD-LDKLWHSIDEVIVKTIISAWPILKHSYHAC 279 YD E G K + L + S G L K + + VI++++ S ++ H Sbjct: 255 AD--YDPERGLKWSLPKLFRFFKSVHGQSKLSKTMNDLTNVIIESLKSVQNLIIQDNH-- 310 Query: 280 FPSHDMVHACFEILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTFTMLN 339 CFE+ G+DIL D L P++LEVN SPS +Q D E+K +L M++ Sbjct: 311 ---------CFELYGYDILFDENLKPWLLEVNASPSLTASSQEDFELKYRILNH---MID 358 Query: 340 IWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTID 373 + +KK + E+ D L++ +K E +D Sbjct: 359 VLDIEKKLIGNENEVGGFDLLIKNSKPVELCKVD 392 >Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical protein D2013.9 protein. Length = 662 Score = 39.1 bits (87), Expect = 0.009 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 11/103 (10%) Query: 117 KNKTFIIKPECGSQGRGIYLTKSLKDI----KPSDKLICQVYLSKPFLV------DGYKF 166 ++ +I+KP ++G + +T+ L I + K++C+ Y+ +P L + KF Sbjct: 434 QHNVWIVKPWNLARGMDMTVTEDLNQIIRMIETGPKIVCE-YIPRPLLFPRPDNGNKVKF 492 Query: 167 DIRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVF 209 D+R + P+ +VYN +RFA + ++ N + F Sbjct: 493 DLRYIVFLNGIAPVTAYVYNRFWIRFAINEFSLSNFEDVETHF 535 >Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical protein D2013.9 protein. Length = 662 Score = 39.1 bits (87), Expect = 0.009 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 11/103 (10%) Query: 117 KNKTFIIKPECGSQGRGIYLTKSLKDI----KPSDKLICQVYLSKPFLV------DGYKF 166 ++ +I+KP ++G + +T+ L I + K++C+ Y+ +P L + KF Sbjct: 434 QHNVWIVKPWNLARGMDMTVTEDLNQIIRMIETGPKIVCE-YIPRPLLFPRPDNGNKVKF 492 Query: 167 DIRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVF 209 D+R + P+ +VYN +RFA + ++ N + F Sbjct: 493 DLRYIVFLNGIAPVTAYVYNRFWIRFAINEFSLSNFEDVETHF 535 >Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical protein K07C5.7 protein. Length = 485 Score = 36.3 bits (80), Expect = 0.066 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 237 STLNKILLSQGVDLDKLWHSIDEVIVKTIISAWPILKHSYHACFPSHDMVHACFEILGFD 296 ST++ L QG+D K+W I +I + + + S + + FE+ FD Sbjct: 273 STIDSYLGMQGMDTSKIWLQIRNIIGEVFRTQQTKMLMSLQ----NLKLNPQYFELSRFD 328 Query: 297 ILLDHKLHPYILEVNHSPSFHTDTQLDREV-KENLLTDTFTMLNI 340 ++D +L+ +++E N SP+ + ++ E +L + F++ I Sbjct: 329 FVVDDQLNVFLMEANMSPNLSSGHFKQNQILYEQVLMNIFSLTGI 373 >U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine kinase protein. Length = 982 Score = 32.7 bits (71), Expect = 0.81 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 320 TQLDREVKENLLTDTFTMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREK 379 +Q + ++K+ ++ D L WQ D++RVL E ++ + L+ K T ++ +E+ Sbjct: 846 SQYESQIKK-MVQDKTVKLESWQEDEQRVLSEKLEKELEELIAYQKKTRATLEEQIKKER 904 Query: 380 TPWQTQI 386 T + +I Sbjct: 905 TALEERI 911 >U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase protein 18, isoforma protein. Length = 982 Score = 32.7 bits (71), Expect = 0.81 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 320 TQLDREVKENLLTDTFTMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREK 379 +Q + ++K+ ++ D L WQ D++RVL E ++ + L+ K T ++ +E+ Sbjct: 846 SQYESQIKK-MVQDKTVKLESWQEDEQRVLSEKLEKELEELIAYQKKTRATLEEQIKKER 904 Query: 380 TPWQTQI 386 T + +I Sbjct: 905 TALEERI 911 >U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical protein K02F3.12b protein. Length = 608 Score = 31.5 bits (68), Expect = 1.9 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 345 KKRVLEEDRKRIRDRL-LQTNKYAETTTIDEKDREKTPWQ---TQIQWEESHLGNFR 397 KK L + R+ I ++ L+TN+ ++ T D DR+ PW T+I E+ HL FR Sbjct: 33 KKSELTQKRQAIERKIELKTNEDSDVVT-DRWDRDGFPWSDEATKILKEQFHLEKFR 88 >U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical protein K02F3.12a protein. Length = 631 Score = 31.5 bits (68), Expect = 1.9 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 345 KKRVLEEDRKRIRDRL-LQTNKYAETTTIDEKDREKTPWQ---TQIQWEESHLGNFR 397 KK L + R+ I ++ L+TN+ ++ T D DR+ PW T+I E+ HL FR Sbjct: 56 KKSELTQKRQAIERKIELKTNEDSDVVT-DRWDRDGFPWSDEATKILKEQFHLEKFR 111 >Z68316-5|CAL49438.1| 326|Caenorhabditis elegans Hypothetical protein K08E4.7 protein. Length = 326 Score = 30.3 bits (65), Expect = 4.3 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 317 HTDTQLDREVKENL--LTDTFTMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTID 373 HTD+Q++ E EN+ L D F + + C +K +++ D + +L+ ++A +D Sbjct: 223 HTDSQINIETIENMMVLADLFLIDCLMCCCEKILIKADSVNLAKKLIWAERFALNELMD 281 >Z14092-11|CAI46627.1| 817|Caenorhabditis elegans Hypothetical protein R107.4d protein. Length = 817 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 571 DEENWDFK---TGRRKEIWCLWATVSYFCLTKDLEFHHPNGNRCI 612 + NW K T + ++W L T+ YFC T F H N+ + Sbjct: 217 NRHNWKTKSAYTSEQCDLWALGCTL-YFCATGKFPFEHERNNKSL 260 >Z14092-5|CAD45600.1| 816|Caenorhabditis elegans Hypothetical protein R107.4c protein. Length = 816 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 571 DEENWDFK---TGRRKEIWCLWATVSYFCLTKDLEFHHPNGNRCI 612 + NW K T + ++W L T+ YFC T F H N+ + Sbjct: 217 NRHNWKTKSAYTSEQCDLWALGCTL-YFCATGKFPFEHERNNKSL 260 >Z14092-4|CAD45599.1| 820|Caenorhabditis elegans Hypothetical protein R107.4b protein. Length = 820 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 571 DEENWDFK---TGRRKEIWCLWATVSYFCLTKDLEFHHPNGNRCI 612 + NW K T + ++W L T+ YFC T F H N+ + Sbjct: 217 NRHNWKTKSAYTSEQCDLWALGCTL-YFCATGKFPFEHERNNKSL 260 >Z14092-3|CAA78473.3| 754|Caenorhabditis elegans Hypothetical protein R107.4a protein. Length = 754 Score = 29.9 bits (64), Expect = 5.7 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 571 DEENWDFK---TGRRKEIWCLWATVSYFCLTKDLEFHHPNGNRCI 612 + NW K T + ++W L T+ YFC T F H N+ + Sbjct: 217 NRHNWKTKSAYTSEQCDLWALGCTL-YFCATGKFPFEHERNNKSL 260 >AF036688-1|AAB88316.1| 225|Caenorhabditis elegans Hypothetical protein C24D10.5 protein. Length = 225 Score = 29.9 bits (64), Expect = 5.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 382 WQTQIQWEESHLGNFRRVYPVGEQYASLF 410 W ++E HLGNF++ Y +G ++F Sbjct: 65 WGNDSEYESGHLGNFKQNYRIGSYGIAMF 93 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.133 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,560,504 Number of Sequences: 27539 Number of extensions: 679905 Number of successful extensions: 2049 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 2018 Number of HSP's gapped (non-prelim): 22 length of query: 636 length of database: 12,573,161 effective HSP length: 86 effective length of query: 550 effective length of database: 10,204,807 effective search space: 5612643850 effective search space used: 5612643850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 63 (29.5 bits)
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