Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001421-TA|BGIBMGA001421-PA|undefined
         (84 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38216| Best HMM Match : APOBEC_C (HMM E-Value=7.3)                  31   0.13 
SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.41 
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.54 
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)                  28   0.94 
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               25   6.7  

>SB_38216| Best HMM Match : APOBEC_C (HMM E-Value=7.3)
          Length = 340

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 22 NGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTAN 61
          NGT CEN  + T  A  +P  VDC IS  E    +NG  N
Sbjct: 42 NGTNCEN--DSTNNAI-EPTAVDCGISGNENLEHKNGMKN 78


>SB_17377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 11  GHDIPRFVVDQNGTECENPFEETRQATTKPVHVDC 45
           G+++P F V++N  +  +  +ET   +T+P + DC
Sbjct: 127 GNNLPGFYVEKNAKDPSSTQDETEIPSTEPANNDC 161


>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 1   MHAHDFLNDSGHDIPRFVVDQNGTECENPFEETRQATTKPVHVDCLISTQE-QRPMENGT 59
           ++  D  N +  DIPR + D  GTE  +     R  + K  HV+ L  T E   P+E G 
Sbjct: 135 LNGDDINNIAEKDIPRLLSDPEGTEFRH-----RHVSEKVPHVEELPQTPEVNPPLEQGQ 189

Query: 60  ANV 62
             V
Sbjct: 190 TAV 192


>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
          Length = 460

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 4   HDFLNDSGHDIPRFVVDQN--GTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTAN 61
           HD + ++G++    V+++   G + E   E TR           +  TQE R   N T  
Sbjct: 322 HDDITNAGNNETTVVIEEGTVGRQSEEVGENTRVGAKNEAAAGEISETQENRLASNSTVT 381

Query: 62  VFLTSALTPSTLAVLVLVK 80
           V     LT   + +LVL K
Sbjct: 382 V-----LTYRGIGLLVLAK 395


>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 36  ATTKPVHVDCLISTQEQRPMENGTANVFLTSALTPSTLAV 75
           A T+ + ++C+I   +  P ENG + V     L P++L +
Sbjct: 880 AVTQSMEIECVIRPPQFTPSENGESVVSNIVELGPNSLVL 919


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 16   RFVVDQNGTECENPFEETRQATTKPVHVDCLISTQEQRPMENGTANVFLTSAL 68
            R + + NGT CEN    T  A T  + +   ++T E R  ++G+  V  + A+
Sbjct: 1487 RCLAEFNGTRCENGTATTFLANTSSIQLG--LNTTEWRFGQSGSLRVRTSRAI 1537


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 12  HDIPRFVVDQNGTECENPFEETRQATTK---PVH----VDCLISTQEQRPMENGT 59
           H + R V+D      +NP E+ R+  +K    VH    VD L+ST + +  E  T
Sbjct: 192 HQLKRNVIDGEKAIIQNPNEQQRKDHSKCEFAVHEVYGVDVLVSTGDGKTKEKDT 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,095
Number of Sequences: 59808
Number of extensions: 95959
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 7
length of query: 84
length of database: 16,821,457
effective HSP length: 61
effective length of query: 23
effective length of database: 13,173,169
effective search space: 302982887
effective search space used: 302982887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)