Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001409-TA|BGIBMGA001409-PA|undefined
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            26   3.7  
SB_9633| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.9  
SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)           25   8.5  
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 20 KGHGAKHQLKGEEPPQKFYDVVTDVTDRN 48
          +G   KHQ K E+ P K+  ++ D  D++
Sbjct: 30 RGKYKKHQKKAEQQPDKYPSLIIDGMDQS 58


>SB_9633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 43 DVTDRNGWCEYV 54
          D TDR+ WCEY+
Sbjct: 3  DSTDRHRWCEYI 14


>SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)
          Length = 646

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 5   DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFY 38
           +E  + + V  + +     + H + GEEPPQ+ Y
Sbjct: 417 EEGCDIICVWQDGDSSSKKSVHNVYGEEPPQRVY 450


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 5   DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFY 38
           +E  + + V  + +     + H + GEEPPQ+ Y
Sbjct: 625 EEGCDIICVWQDGDSSSKKSVHNVYGEEPPQRVY 658


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 5   DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFY 38
           +E  + + V  + +     + H + GEEPPQ+ Y
Sbjct: 436 EEGCDIICVWQDGDSSSKKSVHNVYGEEPPQRVY 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,925
Number of Sequences: 59808
Number of extensions: 96561
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)