Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001409-TA|BGIBMGA001409-PA|undefined
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical p...    27   2.1  
Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    25   8.6  
AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.     25   8.6  
AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta p...    25   8.6  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    25   8.6  

>Z81537-11|CAB04377.2|  329|Caenorhabditis elegans Hypothetical
           protein F41D3.6 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 25  KHQLKGEEPPQKFYDVVTDV-TDRNGWCEYVRATRVITDYDHNGHD 69
           K  LK E+P +KF  +++   + R+  C +VR    +TD  H G D
Sbjct: 163 KEWLKPEDP-EKFRMMISKTESQRHKTCVHVRRGDFLTDEQHAGTD 207


>Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical
           protein R17.2 protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5   DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGWCEYV 54
           ++ + RL+ V    GK H A   +      Q   +V+TD  ++  WCE +
Sbjct: 252 EKDVSRLVAVVVESGKDHPAYAAISSRPISQLHDEVITD--EQVKWCEEI 299


>Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical
          protein F11C1.6b protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 32 EPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNGHD 69
          +PP+  + V +  TD+N    Y   T++ T+Y    +D
Sbjct: 59 QPPE--HQVSSSTTDQNNQINYFDQTKIKTEYIKTEYD 94


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 32  EPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNGHD 69
           +PP+  + V +  TD+N    Y   T++ T+Y    +D
Sbjct: 139 QPPE--HQVSSSTTDQNNQINYFDQTKIKTEYIKTEYD 174


>AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.
          Length = 233

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 32  EPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNGHD 69
           +PP+  + V +  TD+N    Y   T++ T+Y    +D
Sbjct: 139 QPPE--HQVSSSTTDQNNQINYFDQTKIKTEYIKTEYD 174


>AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta
          protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 32 EPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNGHD 69
          +PP+  + V +  TD+N    Y   T++ T+Y    +D
Sbjct: 59 QPPE--HQVSSSTTDQNNQINYFDQTKIKTEYIKTEYD 94


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 32  EPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNGHD 69
           +PP+  + V +  TD+N    Y   T++ T+Y    +D
Sbjct: 135 QPPE--HQVSSSTTDQNNQINYFDQTKIKTEYIKTEYD 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,450
Number of Sequences: 27539
Number of extensions: 68838
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)