Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001409-TA|BGIBMGA001409-PA|undefined
         (69 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13975.1 68415.m01553 Expressed protein                             29   0.50 
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    27   1.5  
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    27   1.5  
At4g16280.1 68417.m02469 flowering time control protein / FCA ga...    27   1.5  
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI...    27   1.5  
At1g25370.1 68414.m03147 expressed protein                             27   1.5  
At1g65340.1 68414.m07409 cytochrome P450, putative similar to cy...    27   2.0  
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi...    26   3.5  
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ...    25   6.2  
At5g13160.1 68418.m01507 protein kinase family protein contains ...    25   8.2  
At3g57120.1 68416.m06359 protein kinase family protein contains ...    25   8.2  

>At2g13975.1 68415.m01553 Expressed protein
          Length = 103

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 5  DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGWC 51
          +++L RL ++ N   K     ++LK      +   +V D+  R  WC
Sbjct: 24 EDALPRLAIIANEISKAKSEANELKAMIQEMREEAMVNDMKTRRNWC 70


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 19  GKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGW 50
           G G G + Q  G  P   F D   DV+  N W
Sbjct: 307 GLGSGPRFQASGPRPTSNFGDSSGDVSHTNPW 338


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 19  GKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGW 50
           G G G + Q  G  P   F D   DV+  N W
Sbjct: 307 GLGSGPRFQASGPRPTSNFGDSSGDVSHTNPW 338


>At4g16280.1 68417.m02469 flowering time control protein / FCA
          gamma (FCA) identical to SP|O04425 Flowering time
          control protein FCA {Arabidopsis thaliana}; four
          alternative splice variants, one splicing isoform
          contains a non-consensus CA donor splice site, based on
          cDNA: gi:2204090
          Length = 505

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 19 GKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGW 50
          G G G + Q  G  P   F D   DV+  N W
Sbjct: 65 GLGSGPRFQASGPRPTSNFGDSSGDVSHTNPW 96


>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
          PPIC-type family protein similar to SP|Q9Y237
          Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
          (EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin
          14) {Homo sapiens}; contains Pfam profile PF00639:
          PPIC-type PPIASE domain
          Length = 142

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 19 GKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGWCEYVRATRVITD 62
          GKG G K     EE P K         D  G C YV+A  V+ +
Sbjct: 9  GKGKG-KQASGSEEAPSKGKGKAGKAADGLGTCTYVKARHVLCE 51


>At1g25370.1 68414.m03147 expressed protein
          Length = 263

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 16 NTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGWCEYVR 55
          N  G G G  H+L+   PP +F D    +  R G  ++ R
Sbjct: 48 NNNGGGPGGDHRLRRRSPPLEFADSPVSMPFRFGNSDHRR 87


>At1g65340.1 68414.m07409 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 503

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 5   DESLERLIVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVT 45
           D+ LE++I     E   HG  H  +GE      Y +  D T
Sbjct: 250 DQLLEKIITAKREEINSHGTHHPSRGEAIDVLTYYMTMDTT 290


>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1184

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 2   RKGDESL-ERLIVVGNTEGKGHGAKHQ 27
           +KG+E L E+    GN EGK  G  HQ
Sbjct: 598 KKGEEDLIEKAKPKGNKEGKKKGTDHQ 624


>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
           Pfam PF00023: Ankyrin repeat
          Length = 664

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 8   LERLIVVGNTEGKGHGAKHQLKGEEPPQKFYDVVTDVTDRNGWCE 52
           LE  + + + E   +G   ++  ++    F D    VTD NG+C+
Sbjct: 348 LELALKLDSPEESSNGESSRISQKQNSCSFEDREIPVTDGNGYCK 392


>At5g13160.1 68418.m01507 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 456

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 2   RKGDESLERLIVVGNTEGKGHGAKHQLKGEE 32
           R  DE   RLI   N +G G G+K  L+G E
Sbjct: 377 RNRDERGARLIT-RNDDGGGSGSKFDLEGSE 406


>At3g57120.1 68416.m06359 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 456

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 28  LKGEEPPQKFYDVVTDVTDRNGWCEYVRATRVITDYDHNG 67
           L GEEP +  YD  T   +R    E  RA     D D +G
Sbjct: 343 LSGEEPLKYRYDKATGDFERTSVIETARAAIEDGDGDRDG 382


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,425
Number of Sequences: 28952
Number of extensions: 69104
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 12,070,560
effective HSP length: 49
effective length of query: 20
effective length of database: 10,651,912
effective search space: 213038240
effective search space used: 213038240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)