Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001406-TA|BGIBMGA001406-PA|IPR012719|T-complex protein
1, gamma subunit, IPR002423|Chaperonin Cpn60/TCP-1,
IPR002194|Chaperonin TCP-1, IPR008950|GroEL-like chaperone, ATPase
         (540 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   2.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   2.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   2.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   2.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 330  ATIVNRTEELKESDVGTGAGLFEIKKIGDEYFTFVTECKNPKACTILLRG 379
            A IV    +L+E  VG+ + +F I   G     F+  C +P+    ++ G
Sbjct: 986  AVIVGTALQLREDGVGSPSAIFLIAMTGS---FFIAACLHPQEFWCIVPG 1032


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 330  ATIVNRTEELKESDVGTGAGLFEIKKIGDEYFTFVTECKNPKACTILLRG 379
            A IV    +L+E  VG+ + +F I   G     F+  C +P+    ++ G
Sbjct: 986  AVIVGTALQLREDGVGSPSAIFLIAMTGS---FFIAACLHPQEFWCIVPG 1032


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 330  ATIVNRTEELKESDVGTGAGLFEIKKIGDEYFTFVTECKNPKACTILLRG 379
            A IV    +L+E  VG+ + +F I   G     F+  C +P+    ++ G
Sbjct: 986  AVIVGTALQLREDGVGSPSAIFLIAMTGS---FFIAACLHPQEFWCIVPG 1032


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 330  ATIVNRTEELKESDVGTGAGLFEIKKIGDEYFTFVTECKNPKACTILLRG 379
            A IV    +L+E  VG+ + +F I   G     F+  C +P+    ++ G
Sbjct: 986  AVIVGTALQLREDGVGSPSAIFLIAMTGS---FFIAACLHPQEFWCIVPG 1032


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,231
Number of Sequences: 317
Number of extensions: 3714
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 540
length of database: 114,650
effective HSP length: 60
effective length of query: 480
effective length of database: 95,630
effective search space: 45902400
effective search space used: 45902400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)