Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001405-TA|BGIBMGA001405-PA|undefined
         (324 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   0.32 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.32 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.32 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   7.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.2  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 289 DNLNNVRDTEGSKVNNDDEDRDEK 312
           D  ++  D +GS  NND++D DE+
Sbjct: 181 DEQDDGDDGQGSSTNNDEDDDDEE 204


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 289 DNLNNVRDTEGSKVNNDDEDRDEK 312
           D  ++  D +GS  NND++D DE+
Sbjct: 181 DEQDDGDDGQGSSTNNDEDDDDEE 204


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 289 DNLNNVRDTEGSKVNNDDEDRDEK 312
           D  ++  D +GS  NND++D DE+
Sbjct: 181 DEQDDGDDGQGSSTNNDEDDDDEE 204


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 291 LNNVRDTEGSKVNNDDEDRDEKLESSDVED 320
           L +++  E +K+NN  +  DEKL++ D ++
Sbjct: 97  LGSLKTKEWAKLNNKFQYIDEKLKTRDQKE 126


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 264 KIFNQNKIGKANGTSYVMKNLKRVYDNLNNVRDTEGS 300
           K ++   +  A  +   ++ +K+VY  L+N R+ + S
Sbjct: 477 KDYSLPMVNHAAASRVNIQRMKQVYQQLSNYRNVDNS 513


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 272 GKANGTSYVMKNLKRVYDNLNNVRDTEGSKVNNDDEDRDEKLESSDV 318
           G     S V+   K    +  ++ D +      DD+D+D+ ++  D+
Sbjct: 205 GSPTDHSPVLNLSKSGGGSAGSLEDDDNISDPEDDDDKDQDMDEGDL 251


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,168
Number of Sequences: 317
Number of extensions: 2579
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 324
length of database: 114,650
effective HSP length: 57
effective length of query: 267
effective length of database: 96,581
effective search space: 25787127
effective search space used: 25787127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)