Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    91   6e-19
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    65   4e-11
AL132860-7|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    40   0.002
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    33   0.22 
AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 56  PCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQGSVLAPTLFNVYTHDVPETLSS 115
           P IK++  + + L  R  R    +  S    L  G+PQGSV++P LF  Y  D+P    +
Sbjct: 500 PKIKLW--LGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDT 557

Query: 116 KF-AYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQA 174
              +YADD++++A+ + IE     ++  +  +  Y     +  +A K+ V  F  + ++ 
Sbjct: 558 MLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFSCDPKEH 617

Query: 175 NKKPNVTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNNDAVKLRTRNNILQKLTGTTWGA 234
             KP++ +    +P    PK LG+TL+       H+ N    ++ +  +++ + GT+WG 
Sbjct: 618 KTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHVGNAIKSMQNKTRVIKSMAGTSWGN 677

Query: 235 SANCLRTSALALTSPDAL 252
               +  +  AL  P AL
Sbjct: 678 DRETMLYTTQALIKPTAL 695


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 35  WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSDGLPQG 94
           +S  +D +    LL KL+ L     +   + + L++R FRV +G   S  +  + G+PQG
Sbjct: 21  FSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQG 80

Query: 95  SVLAPTLFNVYTHDVPETLSSKFA---YADDLALVAQARSIETTESHLESDMATLDDYFI 151
           +VL+P LF +Y +D+   L  K A   +ADD  L A     E +E++L+S +  + D+  
Sbjct: 81  AVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTK 139

Query: 152 RWRLCPNASKT 162
             +L  N SKT
Sbjct: 140 GSKLTLNQSKT 150


>AL132860-7|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 180 VTFRGSTLPSNLCPKYLGVTLDRSLPYSAHLNNDAVKLRTRNNILQKLTGTTWGASANCL 239
           +T+ G  +P+    + LG+  D  L    H      +L+++ N ++ L GTTWG++   +
Sbjct: 58  LTWEGIQIPTTNECRLLGLHFDSMLCMREHHAQIKKRLQSQLNQMKGLAGTTWGSNKELM 117

Query: 240 RTSALALTSPDA 251
            T+  A+T P A
Sbjct: 118 LTTFKAITKPGA 129


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 66  DALTHRPFRVHLGDK-SSLCRVLSDGLPQGSVLAPTLFNVYTH----DVPETLSSKFAYA 120
           D L+ R F V + +        +S G+P+GSV  P LF ++ +     VP ++S   A+A
Sbjct: 31  DFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCS-AFA 89

Query: 121 DDLALVAQARS-IETT 135
           DDL + + +   I+TT
Sbjct: 90  DDLKVYSHSPPLIQTT 105


>AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical
           protein Y19D10B.2 protein.
          Length = 534

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 99  PTLFNVYTHDVPETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPN 158
           P L N+  ++ PE       ++ D        ++E  E+ + +D AT+D+ + ++  CP 
Sbjct: 62  PNLKNITLNEFPEPTDKAMKFSIDSGSPDFCITVEEMENFITADNATVDEIYGKY--CPP 119

Query: 159 ASKTEVC 165
            +   +C
Sbjct: 120 TTTENLC 126


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 65  EDALTHRPFRVHLGD-KSSLCRVLSDGLPQGSVLAPTLFNVYTH----DVPETLSSKFAY 119
           ++ L +R F V +    S     +S G+PQGSV  P LF ++ +    D+  T++    +
Sbjct: 854 KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINIS-CF 912

Query: 120 ADDLAL 125
           ADD+ +
Sbjct: 913 ADDVKI 918


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,274,199
Number of Sequences: 27539
Number of extensions: 250424
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 7
length of query: 274
length of database: 12,573,161
effective HSP length: 80
effective length of query: 194
effective length of database: 10,370,041
effective search space: 2011787954
effective search space used: 2011787954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)