Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001404-TA|BGIBMGA001404-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (274 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11560.3 68416.m01412 expressed protein                             33   0.16 
At3g11560.2 68416.m01411 expressed protein                             33   0.16 
At3g11560.1 68416.m01410 expressed protein                             33   0.16 
At5g62680.1 68418.m07866 proton-dependent oligopeptide transport...    31   0.84 
At5g06220.1 68418.m00694 expressed protein                             31   0.84 
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    29   3.4  

>At3g11560.3 68416.m01412 expressed protein
          Length = 872

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 35  WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSD 89
           +S + DT  R  L+ KL+  +P  + Y  I+     R F  H G ++++CRV  D
Sbjct: 287 FSMIPDTTGR--LMEKLVDFVPLPQAYHSIKSIGLQREFLTHFGPRAAVCRVNGD 339


>At3g11560.2 68416.m01411 expressed protein
          Length = 872

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 35  WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSD 89
           +S + DT  R  L+ KL+  +P  + Y  I+     R F  H G ++++CRV  D
Sbjct: 287 FSMIPDTTGR--LMEKLVDFVPLPQAYHSIKSIGLQREFLTHFGPRAAVCRVNGD 339


>At3g11560.1 68416.m01410 expressed protein
          Length = 619

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 35  WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSD 89
           +S + DT  R  L+ KL+  +P  + Y  I+     R F  H G ++++CRV  D
Sbjct: 287 FSMIPDTTGR--LMEKLVDFVPLPQAYHSIKSIGLQREFLTHFGPRAAVCRVNGD 339


>At5g62680.1 68418.m07866 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 616

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 103 NVYTHDVPETLSSKFAYADDLALVAQARSIETTESHLESDMATLDDYFIRWRLCPNASKT 162
           N+Y +  P+  +SK  Y D    + +A +I T E  L+ D    D     W+LC      
Sbjct: 293 NLYNYYPPKYANSKLKYTDQFRFLDKA-AILTPEDKLQPDGKPADP----WKLCTMQQVE 347

Query: 163 EVCC 166
           EV C
Sbjct: 348 EVKC 351


>At5g06220.1 68418.m00694 expressed protein
          Length = 813

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 35  WSPVYDTVWRQGLLYKLLKLIPCIKIYKVIEDALTHRPFRVHLGDKSSLCRVLSD 89
           +S + DT  R  L+ K +  +P  + Y  ++     R F +H G +++ CRV SD
Sbjct: 273 FSVIPDTTGR--LMDKFVGFVPLPQTYHSMKTLGLRREFLLHFGPRAAACRVKSD 325


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1226

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 151 IRWRLCPNASK--TEVCCF-HLNNRQANKKP--NVTFRGSTLPSNLCPKYLGVTLDRSLP 205
           I + +C   SK    +C F  ++ + ++ +P  ++ F GS LPS  C + +G  L+  +P
Sbjct: 928 ISFSICCYISKIFVSICIFLSISMQNSDSEPLFSICFPGSELPSWFCHEAVGPVLELRMP 987

Query: 206 YSAHLN 211
              H N
Sbjct: 988 PHWHEN 993


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,990,012
Number of Sequences: 28952
Number of extensions: 238166
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 6
length of query: 274
length of database: 12,070,560
effective HSP length: 80
effective length of query: 194
effective length of database: 9,754,400
effective search space: 1892353600
effective search space used: 1892353600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)