Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001401-TA|BGIBMGA001401-PA|IPR003000|Silent information
regulator protein Sir2
         (370 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   4.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   4.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 22  EKFDSNDKLNQKC--VLLAQLVKDSKHIVVHTGAGISTSAGI--PDFRGPNGVWTLEKEG 77
           EK  ++DK  +    V++ + V + + +  HT   I   A     D R  +     E++ 
Sbjct: 849 EKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAKEEDE 908

Query: 78  KKPTINVSFADAQPTKTH 95
            KP+++   +  QP +TH
Sbjct: 909 DKPSVSPLTSPRQPAETH 926


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 141 CNICKRQFVRSSPVETVGKKCSG 163
           C +C R+F +SS V T  +  SG
Sbjct: 52  CPVCDRRFSQSSSVTTHMRTHSG 74


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 141 CNICKRQFVRSSPVETVGKKCSG 163
           C +C R+F +SS V T  +  SG
Sbjct: 308 CPVCDRRFSQSSSVTTHMRTHSG 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,685
Number of Sequences: 317
Number of extensions: 3909
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 370
length of database: 114,650
effective HSP length: 58
effective length of query: 312
effective length of database: 96,264
effective search space: 30034368
effective search space used: 30034368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)