Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   1.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   6.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.5  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
          protein.
          Length = 46

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)

Query: 48 KNFSRPWILQ 57
          K FSRPW+LQ
Sbjct: 15 KAFSRPWLLQ 24


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 144 KYPLYGTGSSAITFYSETAKKTGPGEIL 171
           +YPL G  ++ IT  S+  +   PG  L
Sbjct: 143 EYPLEGDRANFITLLSDLKEAFRPGGYL 170


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 32  KLHPKYPIEPSAYGKGKNFSRPWILQ 57
           K+ P   ++   Y   KNF+ P ILQ
Sbjct: 560 KMQPLRTLKIGVYRNIKNFNIPSILQ 585


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,746
Number of Sequences: 317
Number of extensions: 2287
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 194
length of database: 114,650
effective HSP length: 54
effective length of query: 140
effective length of database: 97,532
effective search space: 13654480
effective search space used: 13654480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)