Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001397-TA|BGIBMGA001397-PA|undefined
         (194 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate mu...    28   3.6  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    27   6.3  
At2g17110.1 68415.m01974 expressed protein                             27   6.3  

>At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 225

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 49  NFSRPWILQDGRTVP---GIGSEMRENYQIPKRPPHTEGI-RKRMLTDFFWEQMLDEVIE 104
           N +R W+L+ G+++P   G+     EN  +P+     +G+ + R+  + F +Q+ +  IE
Sbjct: 8   NTNRYWVLRHGKSIPNERGLVVSSMENGVLPEYQLAPDGVAQARLAGESFLQQLKESNIE 67


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 56  LQDGRTVPGIGSEMRENYQIPKRPPHTEGIR-KRMLTDF---FWEQMLDEVIEELATSQP 111
           ++D RT   +   M  N +IPKR P+ E    KR   +F   F  + LDE     ++S  
Sbjct: 59  IEDHRTQTVMIKGMSLNKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGS 118

Query: 112 V---SEYCTEYDA 121
           V   SE C + +A
Sbjct: 119 VVSNSESCAQSNA 131


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 95  WEQMLD-----EVIEELATSQPVSEYCTEYDANYIKDEF----EPRNLEVAADK------ 139
           WEQ LD     EVIE +        +  E D    ++      +PRN++    +      
Sbjct: 604 WEQALDRISEKEVIEAIRRFTTSVLHLWEQDRLATRERIIGHGDPRNMDREEQRIQKEIQ 663

Query: 140 NMHLKYPLYGTGSSAITFYSETAKKTGPGEILEKFRRCQYFTK 182
            + +K  L G G   I + S+T+ ++  G +   F   + FT+
Sbjct: 664 ELEMKMVLVGPGEDNIVYQSDTSNESLQGSLQRIFEAMERFTE 706


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,306,277
Number of Sequences: 28952
Number of extensions: 238182
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 3
length of query: 194
length of database: 12,070,560
effective HSP length: 77
effective length of query: 117
effective length of database: 9,841,256
effective search space: 1151426952
effective search space used: 1151426952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)