Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001390-TA|BGIBMGA001390-PA|IPR001357|BRCT
         (1178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   6.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   8.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 241 NAYSDNNMSIPRTNLNLSKTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPT 300
           NA S N  +  + +++    S L +  ++ S + E P HI   +SK    L N   +TP 
Sbjct: 26  NALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHINCDSSKFEEDLMNKLPTTPE 85

Query: 301 DATEDSDCTPD 311
                   TPD
Sbjct: 86  YNNHLYGSTPD 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 530  TPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKD 589
            +P S  K    RGR   +  + R +LP            N   +VP NGD    P+  + 
Sbjct: 1830 SPMSEQKSLPRRGRS--SRSSLRTLLPPISVAETTFVGGNQGNVVPGNGDRSDRPELSEA 1887

Query: 590  EKPLSSM 596
            E  + S+
Sbjct: 1888 ECDIDSL 1894



 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 292  SNGNSSTPTDATEDSDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTISPLQNGHSLP 349
            S+ + S P   T     + + +    +K  R  ++      ++T S ISP+    SLP
Sbjct: 1782 SDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLP 1839


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 530  TPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKD 589
            +P S  K    RGR   +  + R +LP            N   +VP NGD    P+  + 
Sbjct: 1826 SPMSEQKSLPRRGRS--SRSSLRTLLPPISVAETTFVGGNQGNVVPGNGDRSDRPELSEA 1883

Query: 590  EKPLSSM 596
            E  + S+
Sbjct: 1884 ECDIDSL 1890



 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 292  SNGNSSTPTDATEDSDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTISPLQNGHSLP 349
            S+ + S P   T     + + +    +K  R  ++      ++T S ISP+    SLP
Sbjct: 1778 SDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLP 1835


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 666 DDGQTKVLLDDFIIFGDMKTLPLTGQLVY 694
           D  + ++LL D +   D +TL L GQ++Y
Sbjct: 284 DRQRNEILLSDELDSVDDRTLRLKGQMIY 312


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 8.4
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 782 RSARSRDKGSSSARKRVASPKSPKASTSGL 811
           RSA S  +G+SS +KR  +P+ PK +   L
Sbjct: 13  RSAESEFEGASSPKKRNKNPQ-PKNAVCAL 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,487
Number of Sequences: 429
Number of extensions: 14159
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 9
length of query: 1178
length of database: 140,377
effective HSP length: 65
effective length of query: 1113
effective length of database: 112,492
effective search space: 125203596
effective search space used: 125203596
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)