Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001386-TA|BGIBMGA001386-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)         355   4e-98
SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)         121   1e-27
SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           29   4.5  
SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)           29   6.0  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)                     29   7.9  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score =  355 bits (872), Expect = 4e-98
 Identities = 170/194 (87%), Positives = 182/194 (93%)

Query: 89  VEIGESVRGEDVYIVQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKD 148
           VEI ESVRGEDVYI+QSG GEINDN+MELLIMINACKIASA RVTAVIPCFPYARQDKKD
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIASAQRVTAVIPCFPYARQDKKD 61

Query: 149 KSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPD 208
           KSRAPI+AKLVAN+LSV+GADHIITMDLHASQIQGFFDIPVDNL+AEPAVLKWIKEN+ D
Sbjct: 62  KSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENVHD 121

Query: 209 WKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDD 268
           W+ S++VSPDAGGAKRVTSIAD LN  FALIHKERK ANEVASMVLVGDVKDRTAILVDD
Sbjct: 122 WQNSVIVSPDAGGAKRVTSIADHLNCGFALIHKERKVANEVASMVLVGDVKDRTAILVDD 181

Query: 269 MADTCGTICHAAEK 282
           +ADTCGT+  AA K
Sbjct: 182 IADTCGTLTLAATK 195


>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
          Length = 270

 Score =  121 bits (291), Expect = 1e-27
 Identities = 59/117 (50%), Positives = 77/117 (65%)

Query: 248 EVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISR 307
           E   M +VGDV  + AI+VDDM D   T   AA  L + GA K+Y ++THG+ SG A   
Sbjct: 151 EKPPMNVVGDVGGKIAIIVDDMIDDATTFVDAARLLRDRGAYKIYVMVTHGLLSGSAPEL 210

Query: 308 INNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHNGESVSYLFSNVP 364
           I  + ++ VVVTNT+P +  +  C KI+ ID+S +LAEAVRR HNGES+ YLF NVP
Sbjct: 211 IEGSEIDEVVVTNTVPHDSKVARCSKIKTIDISQLLAEAVRRIHNGESMGYLFRNVP 267



 Score =  116 bits (278), Expect = 4e-26
 Identities = 54/112 (48%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 135 VIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIPVDNLFA 194
           VIP  PY++Q K  K R  I AKL+A++L  SG   IITMDLH+ +IQGF+DIPVDNL A
Sbjct: 2   VIPYLPYSKQSKMHK-RGAIPAKLMASLLGKSGLTSIITMDLHSKEIQGFYDIPVDNLRA 60

Query: 195 EPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKA 246
            P ++ +I E++PD + +++V+ +   A+R TS A+RL +  A+IH E+K++
Sbjct: 61  SPFIVHYINESVPDCRNAVIVAKNPASAQRATSFAERLRLGIAVIHGEQKES 112


>SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 177 HASQIQGFFD--IPVDNLFAEPAVLKWIKENIP-DWKTSIVVSPDAGG---AKRVTSIAD 230
           +A QIQGFF   +PVDNL A    + +  E      K  +V+SPDAGG   AK   ++  
Sbjct: 27  YARQIQGFFGPRVPVDNLEANLVAMNYFVEQKKFPLKDIVVISPDAGGVARAKNFQALLQ 86

Query: 231 RLNVE---FALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTI 276
            + V+    A+I K+R+ A ++ SM +VG+V  + AI++DD+ DT GT+
Sbjct: 87  SVGVKDSSLAMIIKQRQGAGQIGSMHMVGNVAGKQAIIIDDIIDTAGTL 135



 Score = 37.1 bits (82), Expect = 0.022
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 115 MELLIMINACKIASASRVTAVIPCFPYARQ 144
           MELL+M++  + ASA R+  VIP + YARQ
Sbjct: 1   MELLLMVSTMRRASAKRINVVIPYYGYARQ 30


>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 265  LVDDMADTCGTICHAAEKLIEAGATKVYAILTHG-IFSGPAISRINNACLEAVV 317
            LV D+   CG +         +GA  ++++ T G IFS P ++R  + C EA+V
Sbjct: 953  LVTDVGVVCGCVDGYLYAFDLSGAP-LWSLATSGPIFSSPVLARRRSLCQEAIV 1005


>SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)
          Length = 695

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 206 IPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTA 263
           I D +T ++V    G  K VT+ A  ++V+  L     K   +V ++VLVGD KD TA
Sbjct: 217 IVDVRTLVLV----GDTKDVTATAS-MDVDVDLFVAMEKFIVDVRTLVLVGDTKDVTA 269


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 51   IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCV 89
            + +  GS HP+LA  + +R+G + G+ V +K     TC+
Sbjct: 1190 VDILMGSDHPELALALEERVG-EPGEPVARKTPQGWTCI 1227


>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 535

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 103 VQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK 147
           VQ G     D L  L++ I    + S    TAVI C+ Y   +K+
Sbjct: 416 VQRGGQAKTDKLERLIVRIGIFSVLSTVPATAVIACYFYEYANKE 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,186
Number of Sequences: 59808
Number of extensions: 407775
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 13
length of query: 365
length of database: 16,821,457
effective HSP length: 83
effective length of query: 282
effective length of database: 11,857,393
effective search space: 3343784826
effective search space used: 3343784826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)