Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001382-TA|BGIBMGA001382-PA|IPR002100|Transcription
factor, MADS-box
         (137 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   2.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   3.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   4.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   4.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   5.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   7.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   7.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   9.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   9.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   9.2  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 61  DQCYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSP 96
           D+ Y DR S   P D  P      DG  +LQ   +P
Sbjct: 630 DKLYPDRRSMGYPFDRMPR-----DGVDTLQQFLTP 660


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 61  DQCYDDRPSQSVPLDHCP 78
           D+ Y DR S   P D  P
Sbjct: 631 DKLYPDRRSMGYPFDRMP 648


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 121 YTTFSKRKTGIMK 133
           YTT+S++ +GI K
Sbjct: 95  YTTYSRKLSGIFK 107


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 121 YTTFSKRKTGIMK 133
           YTT+S++ +GI K
Sbjct: 51  YTTYSRKLSGIFK 63


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 59  PSDQ-CYDDRPSQSVPLDHCPMPDIADDGYAS 89
           P DQ   D  P    P DH P+ +++  G  S
Sbjct: 192 PLDQKARDLSPRNGSPTDHSPVLNLSKSGGGS 223


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 17  MGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYD 65
           +G   E  ++Y+A +   A   +G   P M P P P+  +       YD
Sbjct: 292 IGKAQEEANLYAAKKAAGASPYSGTPTPMMSPAP-PQDSMGYSMGSAYD 339


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 87  YASLQPKKSPPSNGK 101
           YASL    +P +NGK
Sbjct: 339 YASLDETPNPVTNGK 353


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 22  EMPDMYSAGRPPSALGGAGPL 42
           ++ ++   G PPS   G GPL
Sbjct: 222 DVVNLSKPGTPPSGEPGNGPL 242


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 33  PSALGGAGPLRPGMQP 48
           P A  G GP + G+QP
Sbjct: 386 PLASPGCGPGQGGLQP 401


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
          protein.
          Length = 392

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 65 DDRPSQSVPLDHCPMPDI 82
          +D  S S+PLD  P+P +
Sbjct: 43 EDMGSFSLPLDLEPLPSL 60


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 33  PSALGGAGPLRPGMQP 48
           P A  G GP + G+QP
Sbjct: 386 PLASPGCGPGQGGLQP 401


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,102
Number of Sequences: 317
Number of extensions: 1684
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 114,650
effective HSP length: 51
effective length of query: 86
effective length of database: 98,483
effective search space:  8469538
effective search space used:  8469538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)