Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001381-TA|BGIBMGA001381-PA|undefined
         (410 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   2.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   9.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 50  LALVNPDEGKQPNNTTESLNSINGTA 75
           L+L++  EG+Q  N T+SL  +  +A
Sbjct: 516 LSLMDESEGRQEPNMTDSLTRLANSA 541


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 266 LLKPKPDLIEHYPNKKIKKIYL 287
           +   +P LIE +  +KI++IYL
Sbjct: 464 IFSERPALIEGWKVEKIQEIYL 485


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,818
Number of Sequences: 317
Number of extensions: 3843
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 410
length of database: 114,650
effective HSP length: 58
effective length of query: 352
effective length of database: 96,264
effective search space: 33884928
effective search space used: 33884928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)