Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001381-TA|BGIBMGA001381-PA|undefined
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     31   1.3  
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  31   1.7  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               31   1.7  
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          31   2.2  
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   3.9  
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 30   3.9  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)                   29   5.2  
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)                   29   6.9  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  
SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       29   9.1  
SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)                 29   9.1  
SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  

>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 84  GYMLVLAPSLLSVFGLAAGVASIMASV----KWYIDHNITWLFIASVMSTVVSLASFVMV 139
           G +L     L ++  L + +A +++ V    K++ DHN  W   A     + SL   +  
Sbjct: 48  GKILPFTALLWTIVSLVSHIADVLSDVYVSGKYFFDHNYWWSGFALGFVVIASLVIQIFS 107

Query: 140 AVWF 143
           A WF
Sbjct: 108 AKWF 111


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 296 LKNQNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAE 355
           L+ +N +VKQ  E   E  +E  +  +    S++   +P   P     AL+  PEV    
Sbjct: 557 LEGENERVKQEKENLREQVEELQLTQV--AGSIQMQMSPGTPPVDTFSALSLSPEVKEKL 614

Query: 356 INLENERKATTSPLSWGDTPDHTVYNQNTLNLEN 389
           + LE+E K   +  +  +  + T   Q+ LN  N
Sbjct: 615 MRLEHENKKLKAQKN-DENEEQTQLLQSILNDAN 647


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 305 QNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINLENERKA 364
           QN+ T  ++ ++ +      C      SNP+  P +HS     + E    +   E ++ +
Sbjct: 6   QNSPTE-DVDEDSVFMICGICRKSSATSNPKLLPCLHSFCFGCLEEKFDQQQQQEQKQNS 64

Query: 365 TTSPLSWGDTP 375
           TTS  S   +P
Sbjct: 65  TTSSSSASSSP 75


>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 103 VASIMASVKWYID--HNITWLF-IASVMSTVVSLASFVMVAVWFASTSEGEITXXXXXXX 159
           V ++ +SV W +    ++TW+  ++S ++ VV+++S V   V  +S+    +T       
Sbjct: 184 VVTVSSSVTWVVTVCSSVTWVVTVSSSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTS 243

Query: 160 XXXXXXXXRQADVYEHNSSHVI-VALNSTKVSEESQGSRVFTTGVLSINILIAAFLEVLW 218
                    +      + + V+ V+ N T V   S    +  T   S+ +++     V W
Sbjct: 244 VVTVSSSVTRVVTVSFSVTWVVTVSFNVTWVVTVSYSVTLVVTVSYSVTLVVTVSSSVTW 303

Query: 219 SI 220
            +
Sbjct: 304 VV 305


>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 15/71 (21%), Positives = 39/71 (54%)

Query: 299 QNNKVKQNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINL 358
           ++ K ++++E+ SE  +E  +        L+G+  P+++ S  SD+    P+  +A+ N 
Sbjct: 12  KSKKKEESSESDSESEEEAPVKLKADVLKLKGIKKPDSSSSSESDSEEEAPKKPAAKQNG 71

Query: 359 ENERKATTSPL 369
           + +++   +P+
Sbjct: 72  KAKKQNGKAPV 82


>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 235 KDDSSEPRGKCISVVTKIK--------GNDPKHIPRNGKLLKPKPDLIEHYPNKKIKKIY 286
           K+ S+  RGK  S+V K +        GN  + + ++ +LLK K DL++    +K +++ 
Sbjct: 414 KEGSAAVRGKRGSIVAKNRITFENRNDGNQNRFLAKSQELLKEKNDLVKAMEYQK-RRVN 472

Query: 287 LAQDENGFYLKNQN-NKVKQNTET 309
           +A+D   F+    N N    + ET
Sbjct: 473 VAKDRKIFFSLTTNCNTAAADAET 496


>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 62  NNTTESLNSINGTANSSFVADNGYMLVLAPSLLSVFGLAAGVASIMASVKWYIDHNITWL 121
           N++  S+NS     + + +A +   +V+   LL+VFG    V  IMA   ++    +T  
Sbjct: 8   NDSNSSINSPPPKFSITTIAVSSTFVVIL-LLLTVFG---NVLVIMAFKVFHRMRQVTNC 63

Query: 122 FIASVMSTVVSLASFVMVAVWFA 144
           F+AS+  T + +A F M  VW A
Sbjct: 64  FVASLAVTDILVAVFAM-PVWVA 85


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 115 DHNITWLFIASVMSTVVSLASFVMVAVWFASTSEGEI 151
           +H  T+LF+ +V+ T+VS  + VM      +T EG++
Sbjct: 210 NHVFTYLFVVTVVGTLVSAPTHVMADTATLTTLEGQL 246


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 308 ETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINLENERKATTS 367
           E +S I  E   +F      L G S+   TP   S++  T+  V +++  L     +TTS
Sbjct: 863 ELNSGISSEMPTSFGGLGDLLSGTSSSTLTPGFFSNSAVTVSSVVTSDKLLSGGITSTTS 922

Query: 368 PL-SWGDTPDHTVYNQNTLN---LENIFNFTKKVDAKNEE 403
           P+ S   +P  T   Q  LN     + F+F  K+    E+
Sbjct: 923 PITSPRLSPIRTTSEQPWLNGGDTSDSFSFLDKIIVSPEK 962


>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
          Length = 897

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 99  LAAGVASIMASVKWYI-DHNITWLFIASVMSTVVSLASFVM 138
           L  GVASI   +  ++ D+  +W++IA+ ++ +++L ++ M
Sbjct: 305 LGIGVASIAIKLITFLADYKFSWIYIATALTGIMALRAWTM 345


>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
          Length = 589

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 61  PNNTTESLNSINGTANSSFVADNGYMLVLAPSL 93
           PNN+    +   G+++SSF A NG++    PS+
Sbjct: 182 PNNSLRPRDESRGSSSSSFSAQNGHLSPRKPSM 214


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 61   PNNTTESLNSINGTANSSFVADNGYMLVLAPSL 93
            PNN+    +   G+++SSF A NG++    PS+
Sbjct: 3288 PNNSLRPRDESRGSSSSSFSAQNGHLSPRKPSM 3320


>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 305 QNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINLENERKA 364
           ++ ET S +  E+ +        L G+S      S+       +    S E+N EN+R+ 
Sbjct: 469 RSNETISNVECEQEVK--ENVTPLTGISRESIRASIKRKREEEMGGTGSEEVNAENKRRR 526

Query: 365 TTSPLSWGDTP 375
            + P S G +P
Sbjct: 527 KSVPRSAGTSP 537


>SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 305 QNTETSSEIYKERMMNFLNRCASLEGVSNPEATPSVHSDALNTIPEVASAEINLENERKA 364
           ++ ET S +  E+ +        L G+S      S+       +    S E+N EN+R+ 
Sbjct: 82  RSNETISNVECEQEVK--ENVTPLTGISRESIRASIKRKREEEMGGTGSEEVNAENKRRR 139

Query: 365 TTSPLSWGDTP 375
            + P S G +P
Sbjct: 140 KSVPRSAGTSP 150


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 331 VSNPEATPSVHSDALNTIPEVASAEINLENERKATTSPLSWGDT 374
           V + E T  +H D++ T P+V   +++   ER+ T  P + G T
Sbjct: 316 VRDDEGTYILHRDSIPTAPKVFPEKLSPSKEREVTKQPEAPGAT 359


>SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)
          Length = 459

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 64  TTESLNSINGTANSSFVADNGYMLVLAPSLLSVFGLAA 101
           T +SL  ++  A+  F+AD G  L+L+   L++ G A+
Sbjct: 83  TADSLLKLSAKADKEFLADLGNHLILSTDALTILGHAS 120


>SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 246 ISVVTKIKGNDPKHIPRNGKL--LKPKPDLIEHYPNKKIKKIYLAQDENGFYLKNQNNKV 303
           +S + ++ G +P   PR  ++  +    D +E   ++K+ ++Y    E    L+ + +++
Sbjct: 304 VSSILEVSGGEPME-PRQAQMHAVHSLKDQLEQ--SQKLAEMYR---EQCIGLEEELSRI 357

Query: 304 KQNTETSSEIYKER 317
           ++ T+ S EI+KER
Sbjct: 358 REKTDVSKEIFKER 371


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 268 KPKPDLIEHYPNKKIKKIYLAQDENGFYLKNQNNKVKQNTETSSEIYK 315
           +P P+   ++PN + +     QD  G YL + N  V Q T+   +I++
Sbjct: 905 QPHPNQYRNFPNNRNQYDRNFQDRRGHYL-DDNRHVHQQTDLEKKIHE 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,887
Number of Sequences: 59808
Number of extensions: 523902
Number of successful extensions: 1557
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 31
length of query: 410
length of database: 16,821,457
effective HSP length: 84
effective length of query: 326
effective length of database: 11,797,585
effective search space: 3846012710
effective search space used: 3846012710
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)