Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001230-TA|BGIBMGA001230-PA|IPR004878|Protein of unknown
function DUF270
         (503 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   5.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   6.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 309 WLYVLVEETKHEIHHLEHAMLSPENTTHNVTEEISCRR 346
           WLY+  E +      +E+   +P+NTT     ++S +R
Sbjct: 425 WLYLNNEGSLVYNVQIENLKTTPDNTTFITLVDVSTKR 462


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 273 AQMPF-IFLTNKDIELGSHKMIQRFGFMHMLATNLC 307
           AQ P  I++  +    GSH M Q   F  +  TN C
Sbjct: 95  AQSPHRIYMHPESPSKGSHWMNQDISFSRVKLTNTC 130


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,175
Number of Sequences: 317
Number of extensions: 3590
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 503
length of database: 114,650
effective HSP length: 60
effective length of query: 443
effective length of database: 95,630
effective search space: 42364090
effective search space used: 42364090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)