Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001228-TA|BGIBMGA001228-PA|IPR004878|Protein of unknown
function DUF270
         (448 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    30   0.029
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.27 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    27   0.27 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.27 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.82 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    25   0.82 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.82 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   5.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   5.8  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 0.029
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 238 LILMVIIAGMLIIGFVFSSVGEEFLELGYLLNN-CTKLTLHTLMLIASLVTLNQLRKLDI 296
           L L  ++   +  GF+  S G  + ++GY L+  C    LHT+ L+ +++T+ ++R  D+
Sbjct: 82  LALFGVVQIYIFSGFIVPS-GVVY-KIGYWLHQICHICELHTIFLVCNVLTVFKIRYKDL 139

Query: 297 NE 298
           N+
Sbjct: 140 NK 141


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 379 LLIANVGMWLLYTFSYKSPESLDERYAFYGKVLWSILGHVSLPLIMFYRF 428
           +LI N+ ++ L     K   S    +   G +L +I+G V++ LIMF +F
Sbjct: 325 MLIRNINLFSLQLAHQKLEFSACGFFLINGTLLHTIVGAVTVYLIMFIQF 374


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 66  LLLAVQIGHFLDEDVNNDDCVNILQVVLDVMFPLYCFVQLYFIFKYSNVIILRY-QNLAR 124
           LL+ +   ++  ++   +D V++LQ+V    + +Y F   Y  +      I+ +   LA+
Sbjct: 118 LLINLYTINYNFKESERNDYVSLLQLVFVFCYFIYLFTVYYIYYSVHEASIINFGYTLAK 177

Query: 125 FAFMHMIGSSLCFWVSAI 142
           F    MI +S C + + +
Sbjct: 178 F----MIFTSTCIYTNLL 191


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 379 LLIANVGMWLLYTFSYKSPESLDERYAFYGKVLWSILGHVSLPLIMFYRF 428
           +LI N+ ++ L     K   S    +   G +L +I+G V++ LIMF +F
Sbjct: 150 MLIRNINLFSLQLAHQKLEFSACGFFLINGTLLHTIVGAVTVYLIMFIQF 199


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 0.82
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 85  CVNILQVVLDVMFPLYCF-----VQLYFIFKYSNVIIL 117
           C+NIL +   V   LYC         + I+K +N+IIL
Sbjct: 320 CLNILSIFTYVPMILYCVYTTATYDSFMIYKTTNIIIL 357


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 0.82
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 85  CVNILQVVLDVMFPLYCF-----VQLYFIFKYSNVIIL 117
           C+NIL +   V   LYC         + I+K +N+IIL
Sbjct: 45  CLNILSIFTYVPMILYCVYTTATYDSFMIYKTTNIIIL 82


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 0.82
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 280 MLIASLVTLNQLRKLDINEHPISLLDDVLLFICLPAFFMETFFSLIATISILNIVKTIDF 339
           ML+    T+  +    +     +LL  V   +CL +  ++ F SL   + +L +  T   
Sbjct: 167 MLLQKYKTVTYVMTGQLKAQNSNLLKSVCADLCLLSECVDLFNSLFGFLVLLLVALTTLQ 226

Query: 340 IVMFIQVTI 348
           ++++IQV +
Sbjct: 227 LLIYIQVIV 235


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
          protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 73 GHFLDEDVNNDDCVNI 88
          G F+ ED+N D C +I
Sbjct: 40 GQFVPEDINPDLCTHI 55


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 39  SQGRHSGSFYLKLGAAGFALGHLIHSV 65
           S G   G   + + A GF LGH + SV
Sbjct: 84  SSGLGGGLSGMPMPALGFGLGHPLESV 110


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.143    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,969
Number of Sequences: 317
Number of extensions: 4782
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 448
length of database: 114,650
effective HSP length: 59
effective length of query: 389
effective length of database: 95,947
effective search space: 37323383
effective search space used: 37323383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)