Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001181-TA|BGIBMGA001181-PA|undefined
(77 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 26 3.5
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 26 3.5
At2g40910.2 68415.m05048 F-box protein-related similar to F-box... 26 3.5
At2g40910.1 68415.m05049 F-box protein-related similar to F-box... 26 3.5
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p... 25 4.6
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa... 25 6.0
At4g23250.1 68417.m03352 protein kinase family protein contains ... 25 6.0
At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family... 25 6.0
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 25 6.0
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 17 VNAVTAKEKRRCYFCTVTG 35
VN V +EK+RC +C TG
Sbjct: 227 VNNVKQQEKKRCKYCLGTG 245
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 17 VNAVTAKEKRRCYFCTVTG 35
VN V +EK+RC +C TG
Sbjct: 143 VNNVKQQEKKRCKYCLGTG 161
>At2g40910.2 68415.m05048 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 442
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1 MENAGQSAAKLFTTKVVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEF 53
M+ G ++ L K+ + + +RR Y C + D +++ PA S F
Sbjct: 30 MDEKGDNSLALLPAKLPMRMCSTRERRKYTCEIPPDLLMEIVMRLPAKSMVRF 82
>At2g40910.1 68415.m05049 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 449
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1 MENAGQSAAKLFTTKVVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEF 53
M+ G ++ L K+ + + +RR Y C + D +++ PA S F
Sbjct: 37 MDEKGDNSLALLPAKLPMRMCSTRERRKYTCEIPPDLLMEIVMRLPAKSMVRF 89
>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
putative similar to laccase [Liriodendron
tulipifera][GI:1621467]
Length = 573
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 59 NGPIYVVDCIIRMGKELV 76
+GP YV C IRMG+ V
Sbjct: 98 DGPSYVTQCPIRMGQSYV 115
>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 310
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 22 AKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFG 57
A EK+ C +QL D P S +LF G
Sbjct: 95 ASEKKHLKSCVAQAKEQLSEVDNQPTESSQGYLFEG 130
>At4g23250.1 68417.m03352 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 998
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 5 GQSAAKLFTTKVVNAVTAKEKRRCY 29
GQS++K FT+ V A + +R+ Y
Sbjct: 645 GQSSSKSFTSSVDEATITQRRRKSY 669
>At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 360
Score = 25.0 bits (52), Expect = 6.0
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 2 ENAGQSAAKLFTTK--VVNAVTAKEKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRN 59
E G A KL K ++ TA +R FC++ D+ V A A+ ++++ GR
Sbjct: 235 ETVGFIAEKLEINKNWYMSIETANFIKR--FCSIFRLDKEAVEAALEAAESYDYMTNGRR 292
Query: 60 GPIYVVDCII 69
P+ V I+
Sbjct: 293 APVSVAAGIV 302
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 24 EKRRCYFCTVTGDDQLDVRDATPASSQHEFLFFGRNGPIYVVDCII 69
E C + G D+ V+D+ P S++ G P+ V D +
Sbjct: 150 EPNVCVEMSANGGDEPAVKDSEPVVSENSRSMEGETEPVVVSDASV 195
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,477
Number of Sequences: 28952
Number of extensions: 55122
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 12,070,560
effective HSP length: 57
effective length of query: 20
effective length of database: 10,420,296
effective search space: 208405920
effective search space used: 208405920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)
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