Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
(66 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17) 27 2.1
SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09) 27 2.1
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_11578| Best HMM Match : ig (HMM E-Value=3.3e-23) 27 2.1
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 27 2.8
SB_14261| Best HMM Match : ig (HMM E-Value=0) 27 2.8
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 26 4.9
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 25 8.6
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40) 25 8.6
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08) 25 8.6
>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
Length = 332
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPERYNL 64
T+ D VN+ C+A+G P P T +P+ + +
Sbjct: 68 TERDQVNLTCSADGT-PPPTFTWISPQGHTV 97
>SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)
Length = 206
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPE 60
T+ D VN+ C+A+G P P T +P+
Sbjct: 16 TEHDQVNLTCSADGT-PPPTFTWISPQ 41
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPERYNL 64
T+ D VN+ C+A+G P P T +P+ + +
Sbjct: 25 TERDQVNLTCSADGT-PPPTFTWISPQGHTV 54
>SB_11578| Best HMM Match : ig (HMM E-Value=3.3e-23)
Length = 259
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPERYNL 64
T+ D VN+ C+A+G P P T +P+ + +
Sbjct: 16 TERDQVNLTCSADGT-PPPTFTWISPQGHTV 45
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 17 RYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERYN 63
R +I P T RL+ +K TVNV + + N+TL T + N
Sbjct: 440 RTVIVTPNTT-RLVTSKISSFTVNVSANSTTSLIQQNITLITTKAVN 485
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 17 RYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERYN 63
R +I P T RL+ +K TVNV + + N+TL T N
Sbjct: 67 RTVIVTPNTT-RLVTSKISSFTVNVSANSTTSLIQQNITLITTMALN 112
>SB_14261| Best HMM Match : ig (HMM E-Value=0)
Length = 1337
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPE 60
T+ D VN+ C+A+G P P T +P+
Sbjct: 365 TERDQVNLTCSADGT-PPPTFTWISPQ 390
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 34 TDDDTVNVICAAEGAFPAPNLTLATPERYNL 64
T+ D VN+ C+A+G P P T P+ + +
Sbjct: 16 TERDQVNLTCSADGT-PPPTFTWIRPQGHTV 45
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 17 RYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERYN 63
R +I P T RL+ +K TVNV + N+TL T + N
Sbjct: 400 RTVIVTPNTT-RLVTSKISSFTVNVSANPTTSLIQQNITLITTKAVN 445
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 25 TNFRLIQNKTDDDTVNVICAAEGAFPAPNLT 55
T+FR DT+++ C A+G FP P +T
Sbjct: 759 TSFRSSVTGVQGDTISLPCRAKG-FPPPVIT 788
>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
Length = 1604
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 33 KTDDDTVNVICAAEGAFPAPNL 54
KT+++T N C A+G PAP++
Sbjct: 628 KTENETSNYTCTADGK-PAPDI 648
>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
Length = 629
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 5 GLEHHMLKVIHLRYLITVPETNFRLIQNKTDD--DTVNVICAAEGAFPAPNLTLATPERY 62
G+EH K + ++T+ NF L++ + +D +N+I + N TL P Y
Sbjct: 134 GVEHVEKKFVGQEAILTICCKNFDLVKMRINDMEKALNLISTIDALSTLENQTLKYPFFY 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,970
Number of Sequences: 59808
Number of extensions: 88056
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 12
length of query: 66
length of database: 16,821,457
effective HSP length: 45
effective length of query: 21
effective length of database: 14,130,097
effective search space: 296732037
effective search space used: 296732037
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -