Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
         (292 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)             200   8e-52
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                30   2.6  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  29   4.5  

>SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score =  200 bits (489), Expect = 8e-52
 Identities = 108/225 (48%), Positives = 138/225 (61%), Gaps = 17/225 (7%)

Query: 1   MTRHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTK 60
           MTRHA+N TA  VY+ HEK KD   SGYG+Q  R+GKDS+K+FDCCSLTLQPCR PV+T 
Sbjct: 1   MTRHAKNATANPVYSRHEKNKDTKTSGYGSQKVRLGKDSVKDFDCCSLTLQPCREPVITP 60

Query: 61  EGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKN 120
           +G+L+DKEAILE I+ +K    R +K+YEKQ KK                   F+  E+ 
Sbjct: 61  DGFLYDKEAILECILHQKTEMARKMKEYEKQKKKLLAEESEKISEKEKSKLASFLEMERR 120

Query: 121 ISSTTPS-----TSAIEEKTINSVS------NIANGK---EKQLPSFWVPSQLPDAKISK 166
           I +T PS     T    E +  +VS      + + G     K LPSFWVPS  P+AK + 
Sbjct: 121 I-TTKPSKAFTATKTTAESSTATVSLDDAKPSTSQGSIIDYKNLPSFWVPSLTPEAKPTL 179

Query: 167 IEKPDPTVYCPISGKPLKMKDLIEVKWTLVND--PDDKKSLIAKE 209
           + KPD   YCP+S KP+K+KDLI VK+T  ND   D  K+L+AKE
Sbjct: 180 VTKPDNKTYCPMSKKPIKIKDLIPVKFTRANDSEQDASKALVAKE 224


>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 212 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDII 265
           + C ++H++  +  PC +   SG+V     +EK I ++   P+ GE + E  +I
Sbjct: 3   FYCSISHEVPEH--PC-ISPLSGNVFERRLIEKYIAENGTDPVNGEPMSEDQLI 53


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/36 (30%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 46 CSLTLQPCRNPVVTKE-GYLFDKEAILEYIISKKNA 80
          C+++ +   +P+V+ E G L++KE +LE+++ + +A
Sbjct: 37 CAISQEQLHSPIVSCELGNLYNKEKLLEFLLDRSSA 72


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 6   RNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNF----DCCSLTLQPCRNPVVTKE 61
           RN +      Y    +  +A G  T  E++ K+S K      +   L LQ C      + 
Sbjct: 464 RNHSVAMKTAYQNGIEKISAEGEETMREKLNKESTKRQNLEEEIRKLQLQVCSQGGEKES 523

Query: 62  GYLFDKEAILEYIISKKNAYNRLLKKYEKQLK 93
             L  K   LE  IS+    N  L+++EK+LK
Sbjct: 524 DRLQKKIRSLEKTISQMIDENDNLRRHEKKLK 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,288
Number of Sequences: 59808
Number of extensions: 410844
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 5
length of query: 292
length of database: 16,821,457
effective HSP length: 82
effective length of query: 210
effective length of database: 11,917,201
effective search space: 2502612210
effective search space used: 2502612210
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)