SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
         (292 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...   233   8e-62
Z46935-9|CAA87053.1|  523|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z36949-3|CAA85417.1|  523|Caenorhabditis elegans Hypothetical pr...    40   0.002
U36187-1|AAC06337.1|  523|Caenorhabditis elegans cyclophilin iso...    40   0.002
AF421146-1|AAL27008.1|  523|Caenorhabditis elegans cyclophilin M...    40   0.002
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    37   0.019
Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    31   0.73 
U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of hsp70...    31   1.3  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF303269-1|AAG50227.1|  266|Caenorhabditis elegans Hsp70-interac...    31   1.3  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    29   2.9  
Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U88182-3|ABD63240.1|  136|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    28   6.8  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    28   9.0  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    28   9.0  

>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score =  233 bits (571), Expect = 8e-62
 Identities = 127/314 (40%), Positives = 178/314 (56%), Gaps = 29/314 (9%)

Query: 1   MTRHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTK 60
           MTRH +N TA +VYTYHE+++DA ASGYGT   R+G DSIK F CCSLTLQPCRNPV++ 
Sbjct: 1   MTRHGKNSTAASVYTYHERRRDAKASGYGTLHARLGADSIKEFHCCSLTLQPCRNPVISP 60

Query: 61  EGYLFDKEAILEYIIS-KKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKF----- 114
            GY+FD+EAILE I++ KK    +L +  ++  ++                  +F     
Sbjct: 61  TGYIFDREAILENILAQKKAYAKKLKEYEKQVAEESAAAKIAEGQAETFTKRTQFSAIES 120

Query: 115 -----------------MNREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPS 157
                            + R+  + ST  +           +SN+   K   LPSFW+P 
Sbjct: 121 TPSRTGAVATPRPEVGSLKRQGGVMSTEIAAKVKAHGEEGVMSNMKGDKSTSLPSFWIPE 180

Query: 158 QLPDAKISKIEKPDPTVYCPISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVT 217
             P A  +K+EKP   V CP+SGKP+K+K+L+EVK+T +   +      A   +++CPVT
Sbjct: 181 LNPTAVATKLEKPSSKVLCPVSGKPIKLKELLEVKFTPMPGTET-----AAHRKFLCPVT 235

Query: 218 HDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQRGGTGYALT 277
            D L+N   CA ++ S  VV  + VEK+IK D + P+ GE + E DII LQRGGTGY+ T
Sbjct: 236 RDELTNTTRCAYLKKSKSVVKYDVVEKLIKGDGIDPINGEPMSEDDIIELQRGGTGYSAT 295

Query: 278 NQNLEGKNERPVLQ 291
           N+  + K  RP L+
Sbjct: 296 NET-KAKLIRPQLE 308


>Z46935-9|CAA87053.1|  523|Caenorhabditis elegans Hypothetical
           protein F59E10.2 protein.
          Length = 523

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)

Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
           P +GKPL  KDLI +K+       DK     ++ ++ CPVT    ++      I TSG+V
Sbjct: 80  PCTGKPLVAKDLIHLKF-------DK----GEDGKFRCPVTFRTFTDHSHILAIATSGNV 128

Query: 237 VTMECVEKI-IKKDWLHP-LTGEKLKEKDIILLQ 268
            + E V+++ +K++ L   LT       DII LQ
Sbjct: 129 YSHEAVQELNLKRNHLKDLLTDVPFTRADIIDLQ 162



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYN 82
          CSL+L P  +PV  + G +FD  AI+ Y+  KK+  N
Sbjct: 45 CSLSLLPFEDPVCARSGEIFDLTAIVPYL--KKHGKN 79



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 180 GKPLKMKD---LIEVKWTLVND-PDDKKSLIAKENRYMCPVTHDILSNAVPCA--VIRTS 233
           GK    KD   L   +W  +    DD  + + +      P+ H  LS  +P    V   S
Sbjct: 2   GKKQHQKDKLYLTTSEWKSIGGHKDDTGTRLQRAQFKRLPINHCSLS-LLPFEDPVCARS 60

Query: 234 GHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQ 268
           G +  +  +   +KK   +P TG+ L  KD+I L+
Sbjct: 61  GEIFDLTAIVPYLKKHGKNPCTGKPLVAKDLIHLK 95


>Z36949-3|CAA85417.1|  523|Caenorhabditis elegans Hypothetical
           protein F59E10.2 protein.
          Length = 523

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)

Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
           P +GKPL  KDLI +K+       DK     ++ ++ CPVT    ++      I TSG+V
Sbjct: 80  PCTGKPLVAKDLIHLKF-------DK----GEDGKFRCPVTFRTFTDHSHILAIATSGNV 128

Query: 237 VTMECVEKI-IKKDWLHP-LTGEKLKEKDIILLQ 268
            + E V+++ +K++ L   LT       DII LQ
Sbjct: 129 YSHEAVQELNLKRNHLKDLLTDVPFTRADIIDLQ 162



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYN 82
          CSL+L P  +PV  + G +FD  AI+ Y+  KK+  N
Sbjct: 45 CSLSLLPFEDPVCARSGEIFDLTAIVPYL--KKHGKN 79



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 180 GKPLKMKD---LIEVKWTLVND-PDDKKSLIAKENRYMCPVTHDILSNAVPCA--VIRTS 233
           GK    KD   L   +W  +    DD  + + +      P+ H  LS  +P    V   S
Sbjct: 2   GKKQHQKDKLYLTTSEWKSIGGHKDDTGTRLQRAQFKRLPINHCSLS-LLPFEDPVCARS 60

Query: 234 GHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQ 268
           G +  +  +   +KK   +P TG+ L  KD+I L+
Sbjct: 61  GEIFDLTAIVPYLKKHGKNPCTGKPLVAKDLIHLK 95


>U36187-1|AAC06337.1|  523|Caenorhabditis elegans cyclophilin
           isoform 4 protein.
          Length = 523

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)

Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
           P +GKPL  KDLI +K+       DK     ++ ++ CPVT    ++      I TSG+V
Sbjct: 80  PCTGKPLVAKDLIHLKF-------DK----GEDGKFRCPVTFRTFTDHSHILAIATSGNV 128

Query: 237 VTMECVEKI-IKKDWLHP-LTGEKLKEKDIILLQ 268
            + E V+++ +K++ L   LT       DII LQ
Sbjct: 129 YSHEAVQELNLKRNHLKDLLTDVPFTRADIIDLQ 162



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYN 82
          CSL+L P  +PV  + G +FD  AI+ Y+  KK+  N
Sbjct: 45 CSLSLLPFEDPVCARSGEIFDLTAIVPYL--KKHGKN 79



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 180 GKPLKMKD---LIEVKWTLVND-PDDKKSLIAKENRYMCPVTHDILSNAVPCA--VIRTS 233
           GK    KD   L   +W  +    DD  + + +      P+ H  LS  +P    V   S
Sbjct: 2   GKKQHQKDKLYLTTSEWKSIGGHKDDTGTRLQRAQFKRLPINHCSLS-LLPFEDPVCARS 60

Query: 234 GHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQ 268
           G +  +  +   +KK   +P TG+ L  KD+I L+
Sbjct: 61  GEIFDLTAIVPYLKKHGKNPCTGKPLVAKDLIHLK 95


>AF421146-1|AAL27008.1|  523|Caenorhabditis elegans cyclophilin
           MOG-6 protein.
          Length = 523

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)

Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
           P +GKPL  KDLI +K+       DK     ++ ++ CPVT    ++      I TSG+V
Sbjct: 80  PCTGKPLVAKDLIHLKF-------DK----GEDGKFRCPVTFRTFTDHSHILAIATSGNV 128

Query: 237 VTMECVEKI-IKKDWLHP-LTGEKLKEKDIILLQ 268
            + E V+++ +K++ L   LT       DII LQ
Sbjct: 129 YSHEAVQELNLKRNHLKDLLTDVPFTRADIIDLQ 162



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYN 82
          CSL+L P  +PV  + G +FD  AI+ Y+  KK+  N
Sbjct: 45 CSLSLLPFEDPVCARSGEIFDLTAIVPYL--KKHGKN 79



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 180 GKPLKMKD---LIEVKWTLVND-PDDKKSLIAKENRYMCPVTHDILSNAVPCA--VIRTS 233
           GK    KD   L   +W  +    DD  + + +      P+ H  LS  +P    V   S
Sbjct: 2   GKKQHQKDKLYLTTSEWKSIGGHKDDTGTRLQRAQFKRLPINHCSLS-LLPFEDPVCARS 60

Query: 234 GHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQ 268
           G +  +  +   +KK   +P TG+ L  KD+I L+
Sbjct: 61  GEIFDLTAIVPYLKKHGKNPCTGKPLVAKDLIHLK 95


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 212 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQRGG 271
           ++C ++ ++  + V   V + SGH+     + K I ++   P++  +L E  ++ L+ GG
Sbjct: 3   FVCGISGELTEDPV---VSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGG 59

Query: 272 TGYALTN 278
           TG A  N
Sbjct: 60  TGSAPRN 66


>Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical
           protein R10E4.3 protein.
          Length = 305

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 59  TKEGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNR- 117
           T E +  D+ A +EY++  K +     KK +K+  K+                I  ++R 
Sbjct: 149 TMEQFDNDETAGIEYLVPLKRSKEEKEKK-KKRKTKERMDALDELTRVTSNDRIPLLSRI 207

Query: 118 ----EKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDPT 173
               + +  +  P+TS I E+T+ + S + + K  QL     PS  P  K S +E     
Sbjct: 208 VHHNQPSRKTLKPATSTIRERTLETQSTMEDDK-TQLKVIRKPSSRPHKKPSTMESAVKK 266

Query: 174 VYCPISGKPLK--MKDLIEVKWTLVNDPDDKKSLIAKE 209
                + K ++   +D + +  TL      KK+ ++KE
Sbjct: 267 KKSAATLKTVRKTTRDELSLATTLEETTRSKKNPLSKE 304


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 113 KFMNREK--NISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQ------LPDAKI 164
           KF+NR K  N+   +  +S I+EKT  + SN++   EK   +  + SQ      +    +
Sbjct: 785 KFINRWKKANVIILSEDSSEIDEKTKAADSNVSEIAEKLEETLKISSQKNIDVAVTSMPV 844

Query: 165 SKIEKPDPTVYCPISGKPLKMKDLIEVKWTLVNDPDD 201
           S   KP+P      +  P+K+K++ + +  L+  P +
Sbjct: 845 STEIKPEPITKLS-NEAPVKIKNVAQPQCDLIEAPQE 880


>U97405-9|AAB53012.2|  266|Caenorhabditis elegans C-term of
           hsp70-interacting protein(chip family) protein 1
           protein.
          Length = 266

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 20  KKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYI 74
           KK        TQ +R  ++ +    C  +TL+  + PV+   G  +D+E I++++
Sbjct: 166 KKRLTELTLATQEKRQNRE-VPEMLCGKITLELMKEPVIVPSGITYDREEIVQHL 219


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/66 (27%), Positives = 27/66 (40%)

Query: 119 KNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDPTVYCPI 178
           KNI     S S  EE   N +S++   KE+Q P    P       + K+   +   Y   
Sbjct: 727 KNIDVEVLSNSEYEEYKKNCLSSVIPSKERQEPGGGAPMNCSTVNVDKLSDKEYKEYKKK 786

Query: 179 SGKPLK 184
            GK ++
Sbjct: 787 CGKKIR 792


>AF303269-1|AAG50227.1|  266|Caenorhabditis elegans
           Hsp70-interacting protein protein.
          Length = 266

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 20  KKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYI 74
           KK        TQ +R  ++ +    C  +TL+  + PV+   G  +D+E I++++
Sbjct: 166 KKRLTELTLATQEKRQNRE-VPEMLCGKITLELMKEPVIVPSGITYDREEIVQHL 219


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 142 IANGKEKQLPSFWVPSQLPDAKISKIEKPDPTVY-CPISGKPLKMKDLIEVKW-TLVN-D 198
           + NG E Q  +           I  I K D   Y C ISG  +K    ++V   +L+   
Sbjct: 493 LLNGHEIQTDNVKYDLTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSLIEYG 552

Query: 199 PDDKKSLIAKENRYMCPVTHDILSNA 224
           P D+KSLI     + C V  + +  A
Sbjct: 553 PADQKSLIGTNVEFSCEVAKEYVRKA 578


>Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical
          protein C01A2.5 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 46 CSLTLQPCRNPVVT-KEGYLFDKEAILEYIISK 77
          C LT  P + PV+  + G L++KE ++  I+SK
Sbjct: 37 CQLTQLPLKRPVIACRFGKLYNKEDVINSILSK 69


>Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.5 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 117 REKNISSTTPSTSAIEEKTIN-SVSNIANGKEKQLPSFWVPSQL--PDAKISKIEKPDPT 173
           ++    +TT S + I++  +   V+   + +  +LP+    S L  P +++SK+EK   +
Sbjct: 223 KKPKTKATTSSNNEIKKNVLKMDVTKDKDLESSKLPTESKRSSLQSPQSELSKVEKAQAS 282

Query: 174 VYCPISGK 181
           + C IS K
Sbjct: 283 INCSISKK 290


>Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical
           protein T05A10.3 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 166 KIEKPDPTVYCPISGKPLKMKDLIEVKWTLVNDPDDKK 203
           K+EK DP V+ P+  +       IE++   V DP  KK
Sbjct: 369 KVEKKDPCVHYPVLTQGQSFSRSIELRHEYVEDPCLKK 406


>U88182-3|ABD63240.1|  136|Caenorhabditis elegans Hypothetical
           protein C53C11.5 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 5/23 (21%)

Query: 192 KWTLVNDPDDKKSLIAKENRYMC 214
           KWT+VN PDDKK      + YMC
Sbjct: 35  KWTIVNMPDDKKM-----DMYMC 52


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 189 IEVKWTLVNDPDDKKSL----IAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
           +++ WT+VN  +   SL    I   N Y+  V  D+++ A+P  ++   G+V
Sbjct: 234 VQLTWTIVNSLNSNFSLFPDIILNVNTYLLTVVSDLVTLALPWILLIHDGNV 285


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 57  VVTKEGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKK 94
           + T+  YLF    +LEY++ KK   NR    Y K LK+
Sbjct: 505 IQTEMQYLFVHRCVLEYLVQKKYNVNR--DDYTKFLKE 540


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 164 ISKIEKPDPTVYCPISGKPLKMKDLIEVKW 193
           I  +++PDPTVY  IS   L     +E  W
Sbjct: 418 IEALKEPDPTVYMQISNALLHRSTSLEFLW 447


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,431,288
Number of Sequences: 27539
Number of extensions: 320576
Number of successful extensions: 676
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 29
length of query: 292
length of database: 12,573,161
effective HSP length: 81
effective length of query: 211
effective length of database: 10,342,502
effective search space: 2182267922
effective search space used: 2182267922
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)

- SilkBase 1999-2023 -