GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001082-TA|BGIBMGA001082-PA|IPR005301|Mob1/phocein,
IPR009078|Ferritin/ribonucleotide reductase-like
         (182 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45550.1 68418.m05594 mob1/phocein family protein contains Pf...    99   2e-21
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    97   8e-21
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf...    80   1e-15
At5g20430.1 68418.m02429 mob1/phocein family protein contains Pf...    34   0.065
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    31   0.60 
At3g52050.1 68416.m05710 5'-3' exonuclease family protein simila...    29   2.4  
At2g46920.2 68415.m05861 protein phosphatase 2C family protein /...    28   4.3  
At2g46920.1 68415.m05860 protein phosphatase 2C family protein /...    28   4.3  
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta...    28   4.3  
At5g12300.1 68418.m01446 C2 domain-containing protein contains P...    27   9.8  
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr...    27   9.8  
At3g07060.1 68416.m00838 expressed protein ; expression supporte...    27   9.8  

>At5g45550.1 68418.m05594 mob1/phocein family protein contains Pfam
           profile: PF03637 Mob1/phocein family
          Length = 215

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 3/138 (2%)

Query: 41  KEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALFDHVNLVY 100
           + ++  P+G     L++ + +  L   ++R+ V LP G D NEWLA +T+  F+ VNL+Y
Sbjct: 14  RPKKSAPSGSKGAQLRKHI-DATLGSGNLREAVRLPPGEDANEWLAVNTVDFFNQVNLLY 72

Query: 101 GTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKTVNDETVF 158
           GT++EFCT   CP MT      Y W D  +  K   V+AP+YV+Y+M + +  ++DET+F
Sbjct: 73  GTLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDETLF 132

Query: 159 PTKYGTYLVARTPNVVSS 176
           P + G        +VV +
Sbjct: 133 PQRLGAPFPQNFKDVVKT 150


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
            PF03637: Mob1/phocein family; contains Pfam F00560:
            Leucine Rich Repeats; contains TIGRFAMS profile
            TIGR01612: reticulocyte binding protein; hypothetical
            protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 34   ISRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGLDYNEWLASHTLALF 93
            I++K  R ++   P+G     L++ + +  L   ++R+ V LP G D NEWLA +T+  F
Sbjct: 1198 INQKTFRPKKSA-PSGTKGAELRKHI-DATLGSGNLREAVKLPPGEDLNEWLAVNTVDFF 1255

Query: 94   DHVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYD--ERGKKSRVAAPQYVDYVMTYTQKT 151
            + VNL++GT++EFCT   C  MT      Y W D  +  K   V+AP+YV+Y+M + +  
Sbjct: 1256 NQVNLLFGTLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQ 1315

Query: 152  VNDETVFPTKYGTYLVARTPNVVSS 176
            ++DET+FP K G         VV +
Sbjct: 1316 LDDETIFPQKLGAAFPPNFKEVVKT 1340


>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 217

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 68  DMRQLVDLPHGLDYNEWLASHTLALFDHVNLVYGTVSEFCTAATCPDMTGPGGRSYAWYD 127
           ++R+ V LP G+D NEW A +    F+ ++L+Y T+ EFCT  TCP M   G   Y W D
Sbjct: 45  NLREAVRLPQGVDINEWFAMNNF--FNQISLLYATLEEFCTQTTCPVMNA-GRYEYRWAD 101

Query: 128 ER--GKKSRVAAPQYVDYVMTYTQKTVNDETVFPTKYG 163
                K   V+AP+YV+Y++ + +  +++E +FP   G
Sbjct: 102 GTTITKPKTVSAPKYVEYLIDWVETEIDNEAIFPKNPG 139


>At5g20430.1 68418.m02429 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 122

 Score = 33.9 bits (74), Expect = 0.065
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 119 GGRSYAWYDERGKKSRVAAPQYVDYVMTYTQKTVNDETVFPTKYG 163
           G   Y W D     + V+AP+YV+ +M + +  +++E +FP K G
Sbjct: 4   GRYEYRWADGT---TMVSAPEYVELLMNWIETQIDNEHIFPKKTG 45


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 27  ELSSIDWISRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVD 74
           + SS DW  R  RR    GE   +   Y +EA  ER   E + R+ ++
Sbjct: 424 DTSSPDWSKRNDRRSRERGEKEQEMDRYEREAERERSRKEREQRRKLE 471


>At3g52050.1 68416.m05710 5'-3' exonuclease family protein similar
           to DNA polymerase type I [Rhodothermus sp. 'ITI 518']
           gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739:
           5'-3' exonuclease, N-terminal resolvase-like domain
          Length = 425

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 79  LDYNEWLASHTLALFDHVNLVYGTVSEFCT 108
           +D  ++L SH   +FDH  + YGT S   T
Sbjct: 142 IDVLKFLPSHVAVVFDHDGVPYGTTSNSST 171


>At2g46920.2 68415.m05861 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 44  EGEPAGDPKLYLQEALLERKLPE--LDMRQLVDLPHG 78
           E  P GDP  YL   LL R   +  ++   L+D+P G
Sbjct: 783 ENVPEGDPAQYLIAELLSRAATKNGMEFHDLLDIPQG 819


>At2g46920.1 68415.m05860 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 44  EGEPAGDPKLYLQEALLERKLPE--LDMRQLVDLPHG 78
           E  P GDP  YL   LL R   +  ++   L+D+P G
Sbjct: 783 ENVPEGDPAQYLIAELLSRAATKNGMEFHDLLDIPQG 819


>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam domains PF00226:
           DnaJ domain and PF00096: Zinc finger, C2H2 type
          Length = 630

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 98  LVYGTVSEFCTAATCPDMTGPGGRSYAWYDERGKKSRVAAP-QYVDYV 144
           L + TV +FC       M GP  +S    +E  KKSR  A  +Y D V
Sbjct: 176 LGFCTVMDFCWVDEYDVMGGPNRKSRRMMEEENKKSRKKAKREYNDTV 223


>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 374

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 34  ISRKARRKEREGEPAGDPKLYLQEALLERKLPELDMRQLVDLPHGL 79
           I+  +RR+ +EGE   +     +E  +++++ E+ MR +      L
Sbjct: 271 ITEVSRRRSKEGEEEEEENKMNEETTMQKQIAEMYMRSMQQFTESL 316


>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 648

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 84  WLASHTLALFDHVNLVYGTVSEFCTAA 110
           W ASH  + F H N+ + T+S   T +
Sbjct: 581 WAASHNHSHFYHANISFKTISSLSTTS 607


>At3g07060.1 68416.m00838 expressed protein ; expression supported
           by MPSS
          Length = 648

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 101 GTVSEFCTAATCPDMTGPGGRSYAWYDERGKKSR-VAAPQ 139
           G +SEF +A +  + +   G S  WYDE    ++ +A P+
Sbjct: 472 GAISEFSSAGSAVEPSEKIGVSQQWYDELDSLAKEIANPE 511


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,699,780
Number of Sequences: 28952
Number of extensions: 196039
Number of successful extensions: 417
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 12
length of query: 182
length of database: 12,070,560
effective HSP length: 77
effective length of query: 105
effective length of database: 9,841,256
effective search space: 1033331880
effective search space used: 1033331880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)