Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   0.43 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   3.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   7.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 39  HPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVIN 92
           HP YFGK G +     K   +C  + L  L   V     + YAS  +   PV N
Sbjct: 303 HPTYFGKTGRKT--VLKTNKYCNFIILFYLSVFV---ILVYYASLDETPNPVTN 351


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
          protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 6  NSFYLIPGKHRKHPGGRGNAGGEHHHR 32
          NS++   G +  H    G+  G HH +
Sbjct: 2  NSYFEQSGFYGSHHHQSGSVAGHHHEQ 28


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory
          receptor candidate 36 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 69 WTLVSEQTRLK 79
          WT++S  TR+K
Sbjct: 54 WTVISASTRIK 64


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,963
Number of Sequences: 317
Number of extensions: 1384
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 138
length of database: 114,650
effective HSP length: 51
effective length of query: 87
effective length of database: 98,483
effective search space:  8568021
effective search space used:  8568021
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)