Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                   105   1e-23
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.79 
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)                  28   3.2  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  27   5.6  
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score =  105 bits (253), Expect = 1e-23
 Identities = 52/107 (48%), Positives = 63/107 (58%)

Query: 32  RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVI 91
           R + +  HPGYFGK+GMR+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VPVI
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126

Query: 92  NIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 138
           ++VKA           PKQPVIV               VGGACVL A
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 5   NNSFYLIPGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNF 51
           NN+ YL PG  R+H G      G H+H ++     P Y  K G  +F
Sbjct: 265 NNALYLGPGTRREHYGMDPYGNGGHYHVMD-----PSYGTKSGAPHF 306


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 37  KYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVIN 92
           +Y P Y+ +  +  + FR  +N   +L  + L+   +  T L ++SAP    P ++
Sbjct: 365 EYRPSYYVRGKLVRYEFRTLRNESQILTQESLYYTRTRHTFL-HSSAPTSLTPTVD 419


>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
          Length = 630

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 14  KHRKHPGGRGN-AGGEHHHRINMDKYHPGYFGKLGMRN 50
           K R+     GN A G HHH  NM + HP        RN
Sbjct: 362 KQRQRCNSVGNIARGGHHHHGNMQRRHPSVGNVSSNRN 399


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 12  PGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 55
           P + +K+  G+ +  G+H HR +     P +  +   RN + RK
Sbjct: 176 PPRRQKYSNGQSDRKGKHRHRDSSSPSPPRHRSRSPFRNGNKRK 219


>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 12  PGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 61
           PGK+ + PG +G  G   +  +   K   G  GK G+R    R  +N  P
Sbjct: 243 PGKNGR-PGAKGAMGPRGYRGLTGSKGARGARGKQGLRGATGRPGRNGVP 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,476,481
Number of Sequences: 59808
Number of extensions: 169192
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 6
length of query: 138
length of database: 16,821,457
effective HSP length: 75
effective length of query: 63
effective length of database: 12,335,857
effective search space: 777158991
effective search space used: 777158991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)