Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001043-TA|BGIBMGA001043-PA|IPR001196|Ribosomal protein
L15
         (138 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   132   6e-32
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   132   8e-32
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    49   1e-06
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    27   4.6  
At4g22190.1 68417.m03208 expressed protein                             27   4.6  
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf...    27   4.6  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    27   6.0  
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z...    27   6.0  
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z...    27   6.0  
At1g80450.1 68414.m09421 VQ motif-containing protein contains PF...    26   8.0  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  132 bits (320), Expect = 6e-32
 Identities = 64/127 (50%), Positives = 80/127 (62%), Gaps = 4/127 (3%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRI  DKYHPGYFGK+GMR FH  +NK FCP++NLDKLW+LV
Sbjct: 23  GKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVIVXXXXXXXXXXXXXXDVG 131
            E  + K  S+ D  VP+I++ +            P+ +P +V              + G
Sbjct: 83  PEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAG 139

Query: 132 GACVLSA 138
           GA VL+A
Sbjct: 140 GAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  132 bits (319), Expect = 8e-32
 Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 4/127 (3%)

Query: 13  GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
           GKHRKHPGGRGNAGG HHHRI  DKYHPGYFGK+GMR FH  +NK FCP++NLDKLW+LV
Sbjct: 23  GKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLV 82

Query: 73  SEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVIVXXXXXXXXXXXXXXDVG 131
            E  + K  S  D  VP+I++ +            P+ +P +V              + G
Sbjct: 83  PEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAG 139

Query: 132 GACVLSA 138
           GA VL+A
Sbjct: 140 GAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
          similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 19/60 (31%)

Query: 13 GKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 72
          GKHRK PG RGNAG                   +GMR FH  +NK +C ++NLDKLW++V
Sbjct: 23 GKHRKLPGSRGNAG-------------------VGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 15  HRKHPGGRGNAGGEHHH-RINMDKYHPGYFGKLGMRNFH 52
           H  H  G G   G H H +    K+  G FGK GM   H
Sbjct: 126 HYGHHHGHGYGYGYHGHGKFKHGKFKHGKFGKHGMFGKH 164


>At4g22190.1 68417.m03208 expressed protein
          Length = 387

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 20  GGRGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 55
           GG  N G ++++  N +  +P   G  G RN   +K
Sbjct: 350 GGNSNIGSDNNNNNNANANNPNPNGLFGFRNLFIKK 385


>At2g35270.1 68415.m04326 DNA-binding protein-related contains
          Pfam domain PF03479: Domain of unknown function
          (DUF296), found in AT-hook motifs Pfam:PF02178
          Length = 285

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 18 HPGGRGNAGGEHHHRINMDKYHPG 41
          H    G AGG HHH  +   +H G
Sbjct: 29 HHEDDGGAGGNHHHHHHNHNHHQG 52


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 12  PGKHRKHPGGRGNAGGEH----HHRINMDKYHPGYFGKL 46
           PG   +H GGRG  G +H    + +I +  +  GY G+L
Sbjct: 667 PGAGGRHQGGRGRRGDDHLVGTYVKIRLGPF-KGYSGRL 704


>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
          ZF-HD homeobox family protein
          Length = 312

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 5  NNSFYLIPGKHRKHPGGRGNAGGEHHHRINMDKYHPGY 42
          NN+    P     H  G GN    HHH+   D +H GY
Sbjct: 45 NNNNTTQPPPMPLHGNGHGNNYDHHHHQ---DPHHVGY 79


>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
          ZF-HD homeobox family protein
          Length = 312

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 5  NNSFYLIPGKHRKHPGGRGNAGGEHHHRINMDKYHPGY 42
          NN+    P     H  G GN    HHH+   D +H GY
Sbjct: 45 NNNNTTQPPPMPLHGNGHGNNYDHHHHQ---DPHHVGY 79


>At1g80450.1 68414.m09421 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 177

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 3   VSNNSFYLIPGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRN---FHFRKNKNF 59
           +S++SF  +   H+K P        + H R    K        +   N    HF +    
Sbjct: 39  ISSSSFSAVSAAHQKLPLTPKKPAFKLHERRQSSKKMELKVNNITNPNDAFSHFHRGFLV 98

Query: 60  CPVLNLDKLWTLVS-EQTRLKYASAPD 85
            PV +LD  W  VS    R ++ + PD
Sbjct: 99  SPVSHLDPFWARVSPHSAREEHHAQPD 125


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,503
Number of Sequences: 28952
Number of extensions: 124352
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 12,070,560
effective HSP length: 74
effective length of query: 64
effective length of database: 9,928,112
effective search space: 635399168
effective search space used: 635399168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)