Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
         (130 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   1.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 102 DYHERIARLEDEKFDLEYIVKR 123
           DYH    R     F +EY+V R
Sbjct: 835 DYHGAWERQTGHNFTMEYLVSR 856


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 8   AKAKKAKQAEIDRKRAEVR 26
           AKAK+ ++AE+++ R   R
Sbjct: 168 AKAKRLQEAELEKLRLSAR 186


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759
Number of Sequences: 317
Number of extensions: 497
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 130
length of database: 114,650
effective HSP length: 50
effective length of query: 80
effective length of database: 98,800
effective search space:  7904000
effective search space used:  7904000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)