Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001030-TA|BGIBMGA001030-PA|IPR001978|Troponin
         (130 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   2.1  
SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                27   4.9  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         27   6.4  
SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9)                   26   8.5  
SB_26066| Best HMM Match : RNA_pol_delta (HMM E-Value=3.1)             26   8.5  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  26   8.5  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 90  DANEDTIKRVCKDYHERIARLEDEKFDLE-YIVKRKDME 127
           +A E  ++ +C+DY  ++AR E E  +L+  + KR D+E
Sbjct: 16  EATELQLRDMCQDYRGQLARREQEIIELKAELHKRDDLE 54


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/24 (41%), Positives = 20/24 (83%)

Query: 90  DANEDTIKRVCKDYHERIARLEDE 113
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_57383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 2  YNPGDYAKAKKAKQAEIDRKRAEVRKRMEE 31
          YN  DY+K +   + E+DR  AEV K++E+
Sbjct: 11 YNSLDYSKRRTIAE-ELDRTPAEVSKKLED 39


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 86  KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 125
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNE 90


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 86  KNIDDANEDTIKRVCKDYHERIA-----RLEDEKFDLEYIVKRKDMEV 128
           +N D+  +D+I  +   +  R+      RLE+EK  LE++++ ++ ++
Sbjct: 229 RNPDNPKDDSIDALLASFENRVPKDEFLRLENEKIRLEHVLRDRERQL 276


>SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9)
          Length = 434

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 6  DYAKAKKAKQAEIDRKRAEVRKRMEEA 32
          DYAK  + K+ + +RKRAE+ +  E++
Sbjct: 19 DYAKYNEYKRKDKERKRAEMDRPKEQS 45


>SB_26066| Best HMM Match : RNA_pol_delta (HMM E-Value=3.1)
          Length = 240

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 89  DDANEDTIKRVCKDYHERIARLEDEKFD 116
           DD +ED  K+ CK+  E  +  EDE  D
Sbjct: 142 DDGDEDNEKKPCKETKEDESDSEDESDD 169


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 92  NEDTIKRVCKDYHERIARLEDEKFDL 117
           NE+ +K+  +DY E++ + E EK+ L
Sbjct: 370 NEEILKKAARDYQEKLKKSE-EKYQL 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,310
Number of Sequences: 59808
Number of extensions: 72106
Number of successful extensions: 330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 8
length of query: 130
length of database: 16,821,457
effective HSP length: 75
effective length of query: 55
effective length of database: 12,335,857
effective search space: 678472135
effective search space used: 678472135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)