Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001027-TA|BGIBMGA001027-PA|IPR000223|Peptidase S26A,
signal peptidase I, IPR011056|Peptidase S24 and S26, C-terminal
region, IPR006198|Peptidase S24, S26A and S26B
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59710| Best HMM Match : Peptidase_S24 (HMM E-Value=0.7)             84   6e-17
SB_1737| Best HMM Match : UPF0147 (HMM E-Value=6)                      62   3e-10
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)           27   6.8  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)                   27   9.0  

>SB_59710| Best HMM Match : Peptidase_S24 (HMM E-Value=0.7)
          Length = 230

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 40  PSMEPTLESNNIL-LTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRG-N 97
           PS     ++ +I+ L +      + ++RGD++    P +P   + KRI  L GD V+   
Sbjct: 54  PSFNTDYKTRDIVVLNKWCVKNFKGIKRGDVVSIVDPHDPDIMLIKRIVALQGDHVKAIG 113

Query: 98  FPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWP 144
           +  R   +PRGH W+EGDNS++S DS  +GPVP GLI+++    VWP
Sbjct: 114 YKNRYVKIPRGHCWIEGDNSNHSMDSNTFGPVPVGLIQAKATHVVWP 160


>SB_1737| Best HMM Match : UPF0147 (HMM E-Value=6)
          Length = 253

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 105 VPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWP 144
           +PRGH W+EGDNS++S DS  +GPVP GLI+++    VWP
Sbjct: 144 IPRGHCWIEGDNSNHSMDSNTFGPVPVGLIQAKATHVVWP 183


>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
          Length = 440

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 88  GLPGDKVRGNFPKRSQVVPRGHVWLEGD 115
           GL  D V G F   S++  R ++W+ GD
Sbjct: 350 GLEVDPVLGGFHVNSELEARSNIWVAGD 377


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 74  SPSNPRQNICKRIKGLPGDKVRGNFPKRSQVVPRG 108
           +PSN R+N C+RI+ +   K  G+F K S V   G
Sbjct: 690 TPSN-RENGCRRIRMMAFIKEEGDFFKESPVQMEG 723


>SB_23676| Best HMM Match : DUF904 (HMM E-Value=0.44)
          Length = 591

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 39  GPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRI 86
           GPS E  + SN     E ++ R +KLR+ +    + P N R+ I  +I
Sbjct: 261 GPSAEEIIRSNE----EEVAKREEKLRKLETKRTEVPENQREGIDTQI 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.140    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,729,993
Number of Sequences: 59808
Number of extensions: 239724
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)